| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3097 |
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| Symbol | trmE |
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| ID | 6177930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 3438524 |
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| End bp | 3439918 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641682874 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001809788 |
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| Protein GI | 172062136 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.151562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0117151 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGCTA CCGACTCCGA TCCGATCGTC GCCATTGCCA CTGCCGCCGG CCGGGGCGGC
ATCGGCGTCG TCCGCGTGTC GTTCGGGCGC GGCGGCGAGG CGGCCGCGCT GCCGCTGATC
GACGCGTTGT GCGGGCAGCA GCTCGCGCCG CGCCATGCGA GCTACGTGCC GTTCGTCGAC
GAGCACGGCG CGCCGCTCGA CCGTGGGATC GCGCTGTATT TCCCTGCGCC GCATTCGTAC
ACCGGCGAGC ACGTGCTGGA ACTGCAGGGG CATGGCGGGC CGATCGTGAT GCAGCTGTTG
CTGCAGCGCT GTCTGGATGC AGGGCGCGGC TTCGGGCTGC GGCTCGCGCA GCCGGGCGAG
TTCACGCGGC GCGCGTTCCT GAACGACAAG CTCGATCTCG CGCAGGCCGA GGCGGTCGCC
GACCTGATCG AGGCGAGCAC CGAAGCGGCG GCGCGCTCGG CCGGGCGCTC GCTCGACGGC
GCGTTCTCGC GGCAGATTCA TGCGTTGGTC GAGGACGTGA TCACGCTGCG GATGCTGGTC
GAGGCGACGC TCGATTTCCC GGAAGAGGAA ATCGACTTCC TGGAAGCGGC CGATGCGCGC
GGCAAGCTCG CGAGGATCCG CGAGCAGCTC GCGCACGTGC TCGGCGACGC GCGACAGGGG
GCGCTGCTGC GCGAGGGGCT GTCGGTCGTG CTGGCGGGGC AGCCGAACGT CGGCAAGTCG
TCGCTGCTGA ATGCGCTCGC CGGCGCGGAG CTGGCGATCG TCACGCCGAT CGCGGGCACG
ACGCGCGACA AGGTCGCGCA GACGATCCAG GTCGAGGGGA TTCCGCTGCA CATCATCGAT
ACGGCCGGGC TGCGCGAGAC GGAGGACGAA GTCGAGCGGA TCGGGATCGC GCGAACCTGG
AGCGAGATCG AGCGCGCGGA CGTCGTGCTG CATCTGCTCG ATTCGCGCAC GGGGATGACG
GCGGACGACG AGGTGATCGC CGCGCGGTTT CCGGGCGGCG TGCCGGTGGT GCGCGTGCTG
AACAAGACGG ACCTCACCGG CGTGCCGGCG TGCGTCGAGC ATCCGGCGGC GGCAGGCGAT
CTGACCGAGG TGCATCTGTC GGCGAAGCGC GGCGACGGGA TCGACATGCT GCGCGCCGAG
CTGCTGCGGA TCGCGGGGTG GCAGGCAGGG GCCGAAGGGG TGTATCTCGC GCGCGAGCGG
CATCTGATCG CGCTGCGGGC CGCGCAGGAG CATCTTGCGC AGGCGGCGGA TCATGCGGAG
CAGCGGGCGC AGTCACTCGA TCTGTTCGCG GAGGAGCTGC GGCTCGCTCA AGAGCAACTC
AATGCGATTA CCGGGGAATT CACTTCCGAT GATCTGCTGG GGGTTATCTT TAGCCGGTTT
TGTATCGGGA AGTGA
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| Protein sequence | MLATDSDPIV AIATAAGRGG IGVVRVSFGR GGEAAALPLI DALCGQQLAP RHASYVPFVD
EHGAPLDRGI ALYFPAPHSY TGEHVLELQG HGGPIVMQLL LQRCLDAGRG FGLRLAQPGE
FTRRAFLNDK LDLAQAEAVA DLIEASTEAA ARSAGRSLDG AFSRQIHALV EDVITLRMLV
EATLDFPEEE IDFLEAADAR GKLARIREQL AHVLGDARQG ALLREGLSVV LAGQPNVGKS
SLLNALAGAE LAIVTPIAGT TRDKVAQTIQ VEGIPLHIID TAGLRETEDE VERIGIARTW
SEIERADVVL HLLDSRTGMT ADDEVIAARF PGGVPVVRVL NKTDLTGVPA CVEHPAAAGD
LTEVHLSAKR GDGIDMLRAE LLRIAGWQAG AEGVYLARER HLIALRAAQE HLAQAADHAE
QRAQSLDLFA EELRLAQEQL NAITGEFTSD DLLGVIFSRF CIGK
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