| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3069 |
|---|
| Symbol | |
|---|
| ID | 6178153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 3409164 |
|---|
| End bp | 3410213 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641682846 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001809761 |
|---|
| Protein GI | 172062109 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCATT TGCAGTCGAT GCGCGTGTTC GTCAAGGTTG CGGATCTCGG CAGTTTCGCG
CGGGCCGCGA GTGCTATGGA TATCTCCAAC GCGGTCGCGA CACGTCACGT CGCCGATCTG
GAGGGCCGCC TCGGCACACG GTTGCTGAAC CGCACCACCC GCAGCCTTTC GCTGACGGAG
TCGGGCCAGG TCTATCTGGA GCGGGCGCGC CAGATTCTCG ATGAGCTCGA GGATGTCGAA
CAGATGGTCG TCGCGCGCAA TCACGAGCCG GTCGGCACGT TGCGCATCGT CGCGCCGGTC
GTGTTCGGCC TGCATAACCT TGCGCCCGTC CTGCAGTCGT ACACGGAGAA TTTCCCGAAA
GTCGTGCCGG ATCTGACGCT GGTCGACCGC CAGGTCGATC TCGTCGAGGA AGGTTTCGAC
GTCGGCATCG TCGTCACGCG CCAGATGCGC AGCGCGAGCA TCGTCACGCG GCGCCTGACC
ACGGGCTGCA TGACCGTGTG CGCGACGCCG AGCTACCTGG AAAAGCATGG CGTGCCGACT
CATCCGGAAC AACTCGCCGA GCATCCGGCG CTGAGCCTGC CGACCGAATA CTGGGGCGAC
GAGCGCGTGT TCACGGGGCC CGACGGTGAA GTGCGCGTGC GCCCGACCAA CGTGATCGTC
GCCAATAACA CCGCGATGCT GCGTCAGTTC GCGCTGCTCG GGATGGGCGT CGCGATCCTG
CCGAGCTACC TGATCGGCGG CGACATCGCG CGCGGCGCGC TGGTGCGGTT GCTGCCGGAT
TTCCGGCTGC CGCAGGTCGA GATCAACATC GCATACCCGA GCCGGCGCCA TCTGCCCGCG
AAGGTGCGCA CGTTCATCGA CCACCTCGTC GAATATTTCA GCCACGCGAC CGACGCGGTG
ATTGGCGAAC AGTGGGCCGC ACAGAGTGCG ATGCCGGCGC CGATCGGCGT CGAGATGCGT
GCCGAGCAGC CCGAATCGAC CGACCCGAAC CTGCAGCCGC GCGTCGCGCG TTCGGCGCGC
CCGCGCGTCG CGGTGCCGTC ACCGCTGTAA
|
|---|
| Protein sequence | MDHLQSMRVF VKVADLGSFA RAASAMDISN AVATRHVADL EGRLGTRLLN RTTRSLSLTE
SGQVYLERAR QILDELEDVE QMVVARNHEP VGTLRIVAPV VFGLHNLAPV LQSYTENFPK
VVPDLTLVDR QVDLVEEGFD VGIVVTRQMR SASIVTRRLT TGCMTVCATP SYLEKHGVPT
HPEQLAEHPA LSLPTEYWGD ERVFTGPDGE VRVRPTNVIV ANNTAMLRQF ALLGMGVAIL
PSYLIGGDIA RGALVRLLPD FRLPQVEINI AYPSRRHLPA KVRTFIDHLV EYFSHATDAV
IGEQWAAQSA MPAPIGVEMR AEQPESTDPN LQPRVARSAR PRVAVPSPL
|
|---|
| |