| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3017 |
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| Symbol | |
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| ID | 6179041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 3341168 |
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| End bp | 3344617 |
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| Gene Length | 3450 bp |
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| Protein Length | 1149 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641682793 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001809709 |
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| Protein GI | 172062057 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGGAA TTGGAGGGTT GGGCGGCGTG CTTGCCGGGT TGCAGGGCAC GGTGCTGGAG
TCGCTCGACA TCGCGCCGCG CCTCGATCGT CATCGCGGGC AGCCGGGTGA TTTGGCCGGC
CGCCACGGGG TGGAGCGGGC GTTGTCCGGC CTCCTCTGCG AGTCGGTCGA CATGGTTTCG
GGCAACAAGA TTTGCCTGTC GCGAAACGAG GTCGACTTCA GGTTGCCCGG TCGTTTGCCG
ATCCACTGGG CGAGGTTCTA TTCGAGCGCG CTGTCCGCGG ACGGCATGCT CGGGCTCGGC
TGGCGTACTG CCTGGGACGT CACGCTGCGA CGCCGGGACG ACAACCGGCT CGACTACATC
GACGAGCAGG GCCGGATCGT GTCGCTGCCC ATGCCCGAAC GCGGCTACCA GATCATCGTT
TCGTCCGAAC AGCTCCATGT GGCCCGACTG CCGGACGACC GCATCGTTGT CGCCGATCTG
ACGCCGCGTT ACACCGTCTT CGGGGAATTC GACGAACACG GCGTCGCACG CATCAAGTAT
GTCGAGGATC TGGGGCGCCG CCGGGTGGGC TGCATCTGGG ACGGCGGGCG CCTGCTCCGC
ATGCGCGGCA CCTGCGGGCA TGAACTTCGG ATGCACTACG GGCGCGACGG GTCACGCTTG
ACCGGCATCG AATGCGTCGA TGGCGGACCG ACCGGCTTTC TTGTTCGCTA CGGGTACGAC
AAGCACGGCC GGCTGGCCGA GGTGCGCAAC CGGCTCGGTG ATGTCGTGCG CGGCTTCGCC
TACGACGACA GCGGTCGTAT GGTCGAGGAA ATCGGTCCGC TTCGACAGAC CATGCGCTAC
ACGTGGCAGA CGATCGGCGG CGCGTCGCGC GTCGTTGAGC GCTCGACGTG CCGCGGGGCG
CGCGAGCACT GCACGTACGA ACTGGCCGAA CGTAGTACGC AAGCGACCGA CGTGTTTGGC
CATACGGCAC ACTGGCAATA CGATGCGCGT GGTCGCGTGC TCGCTTATGT CGATTTCGAC
GGACGGCGGT ATGCGTTCCA GTACGACAAC GCGGGCTGGC CGAGCGAACT GACGTTGCCG
GGCGAGCGGC GGGTGTCCGT CGTCAACGAC AATCTGGGCC GCCCAATCCG TGAGGAGGTG
CCGTTGAGCG GCGAACGCTT GACGGTCTAC GCGTTCGCGA GCCGCGAGCC GCTGAGCATT
CGCCTGCAAG ATGGCCGGAC GTGGCTCTGG CAGCGCGACG ACGAATTGCG GCCGACCCAG
TTCCAGTCGC CGTCCGACGG CGTTACTCAG ACGACGTATT CGGAACAGGA TGGCGTCCAG
GTTCGGACCG ACACGCACGA GCAGCGCGGC GCCGTCGTGC TTGAATACGA CGGGCGCGGG
CTCGTGTCGA AGCGGACCGA CGCCGCGGGG CGCACGGTGA TCTATCGGCG CGACGGCAAC
GGACATGTCG TGGCCGTCAC GGACCCGTTC GGAGCCGTGA CGCAGATCGA GCCGGATCTG
CTCGGGCGGC CGTTGACCGT TACGCTGCCG GACGGCCGGC AGGAGCGGCG GATCTGGAAC
GCCGCGGGGC AGTTGACCAC GTCGACCGGC CTTGACGGGC AGGCACGGCA CTGGCATCGC
GACCAGTACG GATGCGTGGT GAGCGCGGTG GACGAGGAAG GCAACGTCAC GGCGCACGAA
TTCGATGCAC ATGGCCGCAG GGTTCGCACC GTCGCCGGCA ACGGCGGGAT TCAGCGCCTG
ACCTGGGACC CGGTCGAGCG GTTGACGTCG ATCGTCGACG CGGACGGCGT GACCCGCTCG
TTCAGTTATG CCGCATCGGG CGATCTGCAG CAGATCACGG CGACGTCGGA CGGACAGACG
CGCACCGAAA CTTTCGCGAA CGATGCGCTC GGACGGATGG TCGGCCGCGA CACCGAACAT
GCCCGCTATC GCTACACGTA TGTACGCGAC GGCATGCTGG GGATGATCCA CTGCCTGCCG
ACCGAAGCGG GTGCGGCGAT CGGCGTCGAA CCCGACACAC TTCGCTTCGA ATACGATTCG
GCCGGGCGTC TGACTGCGGA GCATGACATG CACGGCGCAC TGCGCTACGC GTATGACGAC
GCCGGGCGGC TCGCCGCCGT GACGCTGCCG GACGGGCACG TCGTGAAATC GGAGCGCGAC
GACGCGGGCA TGGTCTCGCT CATCGGGCTG GGCCACGGCG ACGAGATGCG CGGCATCGCC
GCGCTCGGTT ACGAGGCGGC CACGCGTCAG TTGTTGCGCT CCCAGGGGGA ACTGTATCTA
CGTTCCGTTT ATGCGGGCGG GTCGCTCGAG CGCTGGTTCG CGATGACGGT GATCCGAACC
TCGGATAACG AGATGTTGCC GGGCAGCGCC GAATTCTGGC GGGAGTTTCA TTACAGTCCG
GCCGGCAATC TCGTGCAGGT CGACGACCGT TTCAACGGCC GGACCTATTA CGATTACGAT
CGTCGCGGCT GCCTGCTGCG CGTCGTCTCG GACGAGATCG GCATCGAATA TTTCATGTGG
GATGCAGCGG GCAACTTGCT CGATACGCCG CGCACCGGAT GGCAACCCGC CGTCTATCCC
GATCATCGAC TACGCGAGTG CCGAGGTTAT CGCTACGAAT ACGATGCGTG GGGGCAGGTC
GTCGCCAAGC GCGGCGCGGC GGATGAACAG ACGTTCACAT GGGACGCGGA CGGCCGGTTG
ATGAGCGTGC GGAGCCGGCG CGGCGAGGTG CGTTACCGCT ACGATGCGCT GGGGCGTCGC
GTCGGTAAAT CGGTCGGACA ATCGCACGCG GGTGGGGCAC TGCGCTCGGA CGAGAACGCA
GAGGTCACGC GCTTTGTCTG GCATGGGGAG CGCCTCGTCC AGGAAACGAC GGGCGAGAAC
GTGCGGATTT ATCTGTATCA GCCGGCACGG GACGGGGCCG TCGGTTATGC GCCGCTTGCC
TGCGTGGACC GGCGACGCAG GGACGACGGC ACCTTTTCCG AGATGCACGT GTATTACTAC
CAGACCGATC TCGCCGGCAC GGCGGTCGCG CTGACCGACG AAGCGGGCAA GCTCGTGTGG
AGCGGCCGTT ACAAGGCATG GGGGCAGGTG ATACCGTGGA CTCAACTGGC CACGCCGGTG
CGGCAGCCGT TGCGGTTTGC GGGGCAGTAC CGGGACGACG AGACCGGGCT GCACTTGAAT
GGCCGGCGCT ACTACGATCC CGATGTGGGC CGTTATCTCC GCCCGGACCG TTCCGCACCG
GCGGGCGTGA GCCCGTACCG CTACGTGTCG AGCCCGTTGA GCGTCGCGAA CCCGAACGGT
AGCGCCGTTT CGCTGAGACG GCCGAAGGAG GACGTTGACG GCGCATCGTG TGCGGAAGGG
CCGATTGATC TGTCGACGCG GTTGACAGGC GGCATCGACG AGCGCGATGT CATGCCGGGC
GGCGAATGGC TGGCGTGGCT GGACCGTTAA
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| Protein sequence | MSGIGGLGGV LAGLQGTVLE SLDIAPRLDR HRGQPGDLAG RHGVERALSG LLCESVDMVS
GNKICLSRNE VDFRLPGRLP IHWARFYSSA LSADGMLGLG WRTAWDVTLR RRDDNRLDYI
DEQGRIVSLP MPERGYQIIV SSEQLHVARL PDDRIVVADL TPRYTVFGEF DEHGVARIKY
VEDLGRRRVG CIWDGGRLLR MRGTCGHELR MHYGRDGSRL TGIECVDGGP TGFLVRYGYD
KHGRLAEVRN RLGDVVRGFA YDDSGRMVEE IGPLRQTMRY TWQTIGGASR VVERSTCRGA
REHCTYELAE RSTQATDVFG HTAHWQYDAR GRVLAYVDFD GRRYAFQYDN AGWPSELTLP
GERRVSVVND NLGRPIREEV PLSGERLTVY AFASREPLSI RLQDGRTWLW QRDDELRPTQ
FQSPSDGVTQ TTYSEQDGVQ VRTDTHEQRG AVVLEYDGRG LVSKRTDAAG RTVIYRRDGN
GHVVAVTDPF GAVTQIEPDL LGRPLTVTLP DGRQERRIWN AAGQLTTSTG LDGQARHWHR
DQYGCVVSAV DEEGNVTAHE FDAHGRRVRT VAGNGGIQRL TWDPVERLTS IVDADGVTRS
FSYAASGDLQ QITATSDGQT RTETFANDAL GRMVGRDTEH ARYRYTYVRD GMLGMIHCLP
TEAGAAIGVE PDTLRFEYDS AGRLTAEHDM HGALRYAYDD AGRLAAVTLP DGHVVKSERD
DAGMVSLIGL GHGDEMRGIA ALGYEAATRQ LLRSQGELYL RSVYAGGSLE RWFAMTVIRT
SDNEMLPGSA EFWREFHYSP AGNLVQVDDR FNGRTYYDYD RRGCLLRVVS DEIGIEYFMW
DAAGNLLDTP RTGWQPAVYP DHRLRECRGY RYEYDAWGQV VAKRGAADEQ TFTWDADGRL
MSVRSRRGEV RYRYDALGRR VGKSVGQSHA GGALRSDENA EVTRFVWHGE RLVQETTGEN
VRIYLYQPAR DGAVGYAPLA CVDRRRRDDG TFSEMHVYYY QTDLAGTAVA LTDEAGKLVW
SGRYKAWGQV IPWTQLATPV RQPLRFAGQY RDDETGLHLN GRRYYDPDVG RYLRPDRSAP
AGVSPYRYVS SPLSVANPNG SAVSLRRPKE DVDGASCAEG PIDLSTRLTG GIDERDVMPG
GEWLAWLDR
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