| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3013 |
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| Symbol | |
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| ID | 6179067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 3336470 |
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| End bp | 3337531 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641682789 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001809705 |
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| Protein GI | 172062053 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.695599 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATACAT TCGACTCGAC GCCCGTCGAC GACCGCTCGC CGCTGCACCC TGACTCGCTG
CGCGTGTGGT TCGACGAGCG CACGCCGTGG CAGGCGGGTT TCCTGAGCCT GCTGCGCACG
ATCAGCGCGC GCGATGCAAC CCAGCCGCTG CCCGGCACGG CACGCCTGCC GAGGCAGGAG
CCTTTTCGCG TCGGCCAGCA ACCGTCGATG GCGTTCGCGC CGCGCGAAGT CGCGGCGCTC
GACGTGCAGG GCGGCCGGCT GGACGTCCGG CTCTTCGGGC TCGGACTGTG GGGGCCGCAG
GGCCCGCTGC CGCTTCACAT GACGGAACTG GCGTATAGCC GTGCGGAGAG CCATCAGGAC
AAGACGCTCA TTGCATTCGC CAATCTGTTT CATCACCGGG CGCTCACGCT GTTCTACCGG
GCGTGGGCAT CCGCACAAGC GACCGTCTCG CTCGACCGGC CGTCGCAGGA GACGTTCTCG
TTCTATATCG GCAGCCTGAT GGGCACCGAT CCGGCCGAAG CCGCGTGTAC GCACCCGCCT
CCGCATGCGC GCTATGCGGC CTCGGCGCAC CTGGTGCGCG AGGCACGCAA TCCGGACGGC
CTGGCCGCGA CGCTGTCCCA TTACTTCGGC GTACCTGTGG CCGTCGACGA ATTCGTGTCG
CACTGGATTC AGATCGCCGG CCCCGAGCGC TGCCTGCTCG GCGCGCCCGC ACCGTCGACG
ATCATGGGCG AGGGTGCGCT GCTGGGTGAC ATGATCCCCG ATTGCCAGCA CAAGTTCCGT
CTCGTGATCG GGCCGCTCGA TCTCGACCAG TACCTGCGTC TGACACCGCA TGGCGATGAT
CTGCCGACGC TGGTCGACTG GGTCCGCGCG TTCGTCGGTC TCGAATATGA CTGGGAAATC
AAGCTGCTCG TCAAGCCGCG CGCCGCACCG CCCGCGCGCG CCGACAGCTC TCACCGGCTG
GGCTATTCGA CCTGGCTCGG GGAATCCATG GACGACGAAC CGGTCGTCGG CATGGTGTTC
GAGCCCGAGA AATACTGCGA TCAACTGGAG AACCCAGCAT GA
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| Protein sequence | MDTFDSTPVD DRSPLHPDSL RVWFDERTPW QAGFLSLLRT ISARDATQPL PGTARLPRQE
PFRVGQQPSM AFAPREVAAL DVQGGRLDVR LFGLGLWGPQ GPLPLHMTEL AYSRAESHQD
KTLIAFANLF HHRALTLFYR AWASAQATVS LDRPSQETFS FYIGSLMGTD PAEAACTHPP
PHARYAASAH LVREARNPDG LAATLSHYFG VPVAVDEFVS HWIQIAGPER CLLGAPAPST
IMGEGALLGD MIPDCQHKFR LVIGPLDLDQ YLRLTPHGDD LPTLVDWVRA FVGLEYDWEI
KLLVKPRAAP PARADSSHRL GYSTWLGESM DDEPVVGMVF EPEKYCDQLE NPA
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