| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3012 |
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| Symbol | |
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| ID | 6179071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 3334586 |
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| End bp | 3336466 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641682788 |
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| Product | type VI secretion protein |
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| Protein accession | YP_001809704 |
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| Protein GI | 172062052 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0093996 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCCCA GATTTCTCGA CCACTACAAT CGCGAACTGA CCTACATGCG CGAGCTGTCG
GCGGAGTTCG CCGCACAGCA TCCGAAGATC GCCCGCCGGC TCGGCATGCA CGGCATCGAA
ACGGCCGATC CTTACGTGGA GCGGATGATC GAAGCGTTCT GCTTCATGTC GGCGCGTACG
CAGCTCAAGC TCGACGCCGA ATTCCCGCGC TTTACGCAAC GCCTGCTCGA GGTCGTGTAT
CCGAACTACG TTGCGCCGAC GCCGTCGATG GCCGTGGCGA AGCTACGCCC GAGCCTGCGC
GAAGGCAACT TCAGCAAGGG CTTCACGGTG CCGCGCCACA GCGTATTGCG CTCGTCGATC
CCACCAGGCG AACGGACCGC CTGCGAGTTT CGCAGCGGTC ATGAAATCAC GCTTTGGCCG
ATCGAGATCG TCGACGCGAA GCTGACCGCC GTGCCGCCGG ACCTTCCCGA CCTGCAGCGC
ATGCTGATGC CACACATGCG GCTGCGCGGC GCGCTTCGGT TGCGGCTGCG CACGGTCGGC
GAAATCAAGT TCTCGCAGAT CAGCGGGCTC GACCGGCTGT CGCTCTATAT CGGCGGCGAC
GAGCGGATCG CGTCGCATCT GTTCGAACTG GTCCATGCCG GCGGCATCGC GTCGGTCGTG
CGCGCACACG GCGCTACCCG CGACGATTGC ACGTTCGTCC CGAAGAATCC GGTCGATTTC
GAGGGCCTGC GCCCCGACCA GAGCCTGTTG CCGCAAATGT GGAATACGTT CCACGGGCAC
AATCTGCTGC ACGAGTACTT CACTTGTCGG CAGCGCTTCT ATTTCTTCGT GCTTACGCAG
TTGCAGGCCG GCCTTTCGAA GATCGACGGC AACGAAGCGG AAATCGTGCT ACTGCTCGAC
CGACTGCCGG ACGAGCTGAC GGCCCACGTC GATGCGTCGA GCTTTCAGTT GTTCTGCACG
CCGATCATCA ACCTGTTTCC GCGACGCACC GACCGGATCG AGATCAATCG GGCGCTGACC
GCGTTCCACC TGATTCCGGA CCGCAGCCGC CCACTCGACT ATGAAGTCTT CTCGGTATCG
CGGGTATTCG GCCAGAAAGC CGAAACGTCG ACCGAAGTGA CGTTCAATCC GCTGTACCAG
ACGCTACACA GTGATATCGG CAATTACGGG CGTTACTTTT CGATTCTGCG CGAGCCGCGC
GCGATGTCGG CCAACGCGCG CAAATACGGC ACCCGCAGCG AGTACGTCGG CACCGAAGTA
TTCGTGTCGC TCGTCGATCA GGCCGAAGCG CCCTACGACG ACGCGATCCG CTATCTGTCC
GTCGACGCGT GGCTCACCAA CCGCGACCTG CCGCGCCTGA TTCCGCGCAA CGGGTTCAGC
GACCTCACGA TGCAGGACTC CGTGCCGATC GAAGGCGTGA GTCTCGTGCA TCCGCCAAGC
ACGCCGCGCG AGCCGTACGC GACCGGCGAA ACCGCATGGC GGCTGATTCG CCAGTTGAGC
TTCAACTACA TGCCGCTCGC GGAGCTCGAT CATCGCGACG GCGGCCAGGC CCTGCGCAAC
ATGCTGCGAC TGTTCGTCGG AACGAGCGAA CACGAACAGC GCACGCAGAT CGAGAGCCTC
GTCGGCGCGC GCACCGAACC GGTCGTTCGA CGCCTGCCCG GCCACGGGTT GCTCGTCTAC
GGGCGCGGCG TACGCTGCGA ACTGACCGTC GACGAGAGCG GCTTCTCCGG TGTGAGCCCC
TATTTGTTCG GCCTTGTGCT CGAGCAGTAC CTGGCGCGAC ACGTATCGAT CAACGTCTTT
ACCGAGACGG AACTGCGCTC GATGCAACGC GGCGTCGTGA CACGCTGGAA GCCGCGCATG
GGCGGACGGG GAGCGGTGTA A
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| Protein sequence | MDPRFLDHYN RELTYMRELS AEFAAQHPKI ARRLGMHGIE TADPYVERMI EAFCFMSART
QLKLDAEFPR FTQRLLEVVY PNYVAPTPSM AVAKLRPSLR EGNFSKGFTV PRHSVLRSSI
PPGERTACEF RSGHEITLWP IEIVDAKLTA VPPDLPDLQR MLMPHMRLRG ALRLRLRTVG
EIKFSQISGL DRLSLYIGGD ERIASHLFEL VHAGGIASVV RAHGATRDDC TFVPKNPVDF
EGLRPDQSLL PQMWNTFHGH NLLHEYFTCR QRFYFFVLTQ LQAGLSKIDG NEAEIVLLLD
RLPDELTAHV DASSFQLFCT PIINLFPRRT DRIEINRALT AFHLIPDRSR PLDYEVFSVS
RVFGQKAETS TEVTFNPLYQ TLHSDIGNYG RYFSILREPR AMSANARKYG TRSEYVGTEV
FVSLVDQAEA PYDDAIRYLS VDAWLTNRDL PRLIPRNGFS DLTMQDSVPI EGVSLVHPPS
TPREPYATGE TAWRLIRQLS FNYMPLAELD HRDGGQALRN MLRLFVGTSE HEQRTQIESL
VGARTEPVVR RLPGHGLLVY GRGVRCELTV DESGFSGVSP YLFGLVLEQY LARHVSINVF
TETELRSMQR GVVTRWKPRM GGRGAV
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