Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3008 |
Symbol | |
ID | 6179090 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 3329037 |
End bp | 3331700 |
Gene Length | 2664 bp |
Protein Length | 887 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641682784 |
Product | type VI secretion ATPase |
Protein accession | YP_001809700 |
Protein GI | 172062048 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.694327 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAATTT CAAGGCAGGC CTTATTCGGC AAACTCGGGC ATTCGCTGTT CCGAAGCGTC GAATCCGCCA CGACTTTCTG CAAGCTGCGC GGCAACCCTT ACGTCGAACT GGTGCATTGG CTGCATCAAC TGCTGCAGGC GCCCGACGGC GACCTCCAGC GGATCATCCG GCATTGCGAC ATCGACGCCG AGGCACTCGA TCGGGACGTG CTGCGCGCGC TCGCCGCGCT GCCGGCCGGT GCGAGTTCGA TCAGCGACTT CTCGCACCAT ATCGAAACGG CCGTCGAGCG CGCGTGGGTG CTGGCCTCCC TGGATTTCGG CGACCGCCGC ATTCGCGGCG CATGGCTCGT CGCCGCGCTC GTCAAGACGC CCGAACTGCG CCGCGTGCTG CTGTCGATCT CTCCGGCGTT CGGCAAGATC CCGCTGGAAA GCCTGGGCGA GATGCTGCCC GCGTGGATCG ACGGCTCGCC GGAGGCGGCG GATGCGCCGT ATGACGGCAC CGACTTCGGT GGCGCGGTGC CCGGCGAGGC CGCGGGCGCG CTGGCGCCGG CAGCCGGTGG CGGCTCGCCG CTCGAGCAGT ACTGCAGCGA TTTGACTGCG CGCGCGCGGG CGGGCGAGAT TGATCCGGTC GTCGGCCGCG AGCTCGAGAT CCGCACGATG ATCGATGTGC TGTTGCGCAG GCGTCAAAAC AATCCGCTGC TGACCGGCGA GGCCGGGGTC GGCAAGACGG CCGTGGTCGA ATGTCTGGCC CGCGCGATCG TCGACGGCGA CGTGCCGCCG AAGCTGGCCG ACGTGCGCCT GTTGAGTCTC GACGTCGGCG CACTGCTTGC CGGCGCGAGC ATGAAGGGCG AATTCGAGGC GCGTCTGAAG GGCGTGCTCG AGGCGGCGAC GAAGTCGGCG GTGCCCGTCA TCCTGTTCGT CGATGAAATC CATACGCTGA TCGGCGCCGG CGGCCAGGCC GGCACCGGCG ATGCGGCGAA CCTGCTGAAG CCGGCGCTCG CACGCGGTAC GCTGCGGACG ATCGGCGCGA CGACCTGGGC CGAATACAAG CGCCATATCG AAAAGGACCC GGCGCTGACG CGGCGCTTCC AGGTGCTCCA GGTGCCGGAG CCCGAGGAAG CGGCGGCGAT CGACATGGTG CGCGGGCTCG CGCGCACCTT CTCGCGACAT CACGGCGTCG TCGTGCTCGA CGAAGCGATT CGCGCGGCGG TGACGCTGTC GCATCGGTAC ATTCCGTCAC GGCAACTACC CGACAAGGCG ATCAGTCTGC TCGACACCGC TTGCGCGCGC GTGGCGCTGT CGCAGCACGC GCCGCCGCGC GAGTTGCAGA ACGTGCGCCA GCGCCTGCTG GCGGCGCAAG TCGAATGCGA TCTGCTCGAC CAGGAGCGAT CCATCGGCCT GGGCGACACG GACGCGCTGG CCCGCACACA GGCGCGCATC GCCGAGCTGG AACGCGAGGC GGCGAACGTC GAGGCGCGTT GGCGCGCGCA GGCCGACGCC GCGCAAGCGC TGTTGAGCGC ACGCGAGACC GCACGCGACG CCGCCTCCGG CGTGCCGGCC GACCGGCTGC AGGTGCTCGA GCGCGCGCTC GCGGAGCAGC AGGGCGAGAC GGCGTTCGTG TTCCCTGAAG TGAACGAAGC GATCGTCGCG GCGATCGTGT CCGACTGGAC CGGCATTCCG GTGCGCCGGA TGGTCACCGA CGAGGTCGCC GCGGTGCGCA CGCTGCCTGA CACGCTCGCG GCGCGCGTCA TCGGCCAGCC GGACGCGCTG CAGCAGATCG GCGAGCGCGT GCAGACTGCG CGCGCAGGGC TCACGGATCC GAAAAAACCG CTCGGCGTAT TCATGCTGGC CGGTCCGTCG GGCGTCGGCA AGACCGAGAC GGCGCTGGCG CTGGCCGAGG CGCTGTACGG CGGGGAGCAG AACCTGATCA CGATCAACAT GAGCGAGTAT CAGGAAGCTC ACACCGTGTC TGGGCTCAAG GGGGCGCCGC CCGGCTATGT CGGTTACGGC GAGGGCGGCG TCCTGACCGA GGCGGTGCGG CGCCGGCCCT ACTCGGTGGT GCTGCTCGAC GAGATCGAGA AGGCACATGC CGACGTGCAC GAAATGTTCT TCCAGGTGTT CGACAAGGGG TATATGGAGG ACGGCGACGG ACGCTACATC GATTTCCGCA ACACCACGAT TCTGCTGACC AGCAACGCGG GCTCCGACCT GATCACGAGC CTCTGCTCGG ACGAGGCGCT CGCGCCTCGC ACGGATGCGC TGTGCGCGGC GCTCGGGCCG GCGTTGCTCA AGACGTTCCC GGCCGCGTTT CTCGGCCGCG TGACCGTGGT GCCGTACAGG CCGCTCGCGC AGGCGACGCT GGCGCGGATC GTGCGGCTGC ATCTGGATCG TGTGGTGACC CGCATGGCCG ACGGGCACGG TGTGGCGTTC GGCTATGCGC CGGCGGTGCT CGACTACATC GTCGAACGCT GCCTTGTCCA GGAAACGGGC GCGCGCCTGT TGATCGGCTT CATCGAGCAG CACGTGCTGC CGCGGCTCGC CGCGCAGTGG CTGGATGCGC TGGCGGCGAA GCGTACGCTC ACGCGGGTCG ACCTCGAACT GGTCGATGCG GGCGCGGTGC CTGCCGACGC CTTCATGTTC CGCGCGTCGT ACGCGGACGA CTGA
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Protein sequence | MTISRQALFG KLGHSLFRSV ESATTFCKLR GNPYVELVHW LHQLLQAPDG DLQRIIRHCD IDAEALDRDV LRALAALPAG ASSISDFSHH IETAVERAWV LASLDFGDRR IRGAWLVAAL VKTPELRRVL LSISPAFGKI PLESLGEMLP AWIDGSPEAA DAPYDGTDFG GAVPGEAAGA LAPAAGGGSP LEQYCSDLTA RARAGEIDPV VGRELEIRTM IDVLLRRRQN NPLLTGEAGV GKTAVVECLA RAIVDGDVPP KLADVRLLSL DVGALLAGAS MKGEFEARLK GVLEAATKSA VPVILFVDEI HTLIGAGGQA GTGDAANLLK PALARGTLRT IGATTWAEYK RHIEKDPALT RRFQVLQVPE PEEAAAIDMV RGLARTFSRH HGVVVLDEAI RAAVTLSHRY IPSRQLPDKA ISLLDTACAR VALSQHAPPR ELQNVRQRLL AAQVECDLLD QERSIGLGDT DALARTQARI AELEREAANV EARWRAQADA AQALLSARET ARDAASGVPA DRLQVLERAL AEQQGETAFV FPEVNEAIVA AIVSDWTGIP VRRMVTDEVA AVRTLPDTLA ARVIGQPDAL QQIGERVQTA RAGLTDPKKP LGVFMLAGPS GVGKTETALA LAEALYGGEQ NLITINMSEY QEAHTVSGLK GAPPGYVGYG EGGVLTEAVR RRPYSVVLLD EIEKAHADVH EMFFQVFDKG YMEDGDGRYI DFRNTTILLT SNAGSDLITS LCSDEALAPR TDALCAALGP ALLKTFPAAF LGRVTVVPYR PLAQATLARI VRLHLDRVVT RMADGHGVAF GYAPAVLDYI VERCLVQETG ARLLIGFIEQ HVLPRLAAQW LDALAAKRTL TRVDLELVDA GAVPADAFMF RASYADD
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