Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_3006 |
Symbol | |
ID | 6176834 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 3327534 |
End bp | 3328325 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641682782 |
Product | pyrimidine 5'-nucleotidase |
Protein accession | YP_001809698 |
Protein GI | 172062046 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01993] pyrimidine 5'-nucleotidase |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.632034 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGCGCAC GCCGCCTGCC CAAGCGTTCC GACCTGCCGG CGTCGCTGCG ACGCCGGCGC ATCTCCCGCA GCCGGCCGCG TGCCGGCGCG CCCGTCTGGC TGTTCGATCT CGACAACACG CTGCACCACG CATCGCACGC GATCTTTCCG GAGATCAACC GCGCGATGAC GCAGTACATC ATCGACACGC TCCAAGTCGG GCGTGCCGAG GCCGACCGCC TGCGCACCGG CTACACGCAG CGCTACGGCG CCGCGCTCCT CGGCCTCACT CGCCATCATC CGATCGATCC GCACGACTTC CTGCGGGTCG TCCACACGTT TGCCGACCTG CCCGCGATGC TGCGCGCCGA GCGCGGCCTC GCGCGCATCA TCGCCGCGCT GCCGGGTCGC AAGTTCGTGC TGACCAACGC GCCGGAGAAC TACGCGCGTG CGGTACTGCG CGAGCTGCGC ATCGAGCGGC TGTTCGAACG CGTGATCGCG ATCGAGCACA TGCGCGACCG GCGCACCTGG CGCGCGAAGC CCGACCACAC GATGCTGCGC CGCGCCTTGC GTGCCGCGAA TGCGCGGCTG GCCGACGCGA TCCTCGTCGA AGATACACGC AGCCATCTGA AACGCTACAA GCGGCTCGGC ATCGGTACCG TATGGATCAC CGGCCACCTG CCGGGCCATC TGCCGAGCAT CGGCCGTCCA CATTATGTCG ACCAGCGCAT TCGTTCGTTA AAATCGCTCC GACTGGGCAC ACGATCGGGG CGACAGAAAT GCAGCCGACT TACCCGCAGG ACCAAGCCGT AA
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Protein sequence | MSARRLPKRS DLPASLRRRR ISRSRPRAGA PVWLFDLDNT LHHASHAIFP EINRAMTQYI IDTLQVGRAE ADRLRTGYTQ RYGAALLGLT RHHPIDPHDF LRVVHTFADL PAMLRAERGL ARIIAALPGR KFVLTNAPEN YARAVLRELR IERLFERVIA IEHMRDRRTW RAKPDHTMLR RALRAANARL ADAILVEDTR SHLKRYKRLG IGTVWITGHL PGHLPSIGRP HYVDQRIRSL KSLRLGTRSG RQKCSRLTRR TKP
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