| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2994 |
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| Symbol | dapF |
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| ID | 6176414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 3315713 |
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| End bp | 3316561 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641682770 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001809686 |
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| Protein GI | 172062034 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0384566 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGGCG CGGGCAACGA CTTCGTCGTG CTCGACGGCT ATTCGCGTGC GTTGCCGCCG
CTCACCGAAG CGCAGGTGCG TGCGCTCGCC AACCGGCACT TCGGCATCGG CGCCGACCAG
TTGCTGCTCG TCGAAAAGCC GACCGTCGAC GGCGCGGATT TCAAGTACCG GATCTTCAAT
TGCGACGGCG GCGAGGTCGA ACACTGCGGC AACGGCGCAC GCTGCTTCGT GAAGTTCGTC
AGCGACCGCG GCCTGACCGA CAAGCGCAGC GTGCGCGTGC AGGTCATGAA GGGCCTGATC
ACGCTAACGC TGCAGGACAA CGGCGAAGTC GTCGTCGACA TGGGCGCGCC CGTGTTCGCG
CCGGCGCAGG TGCCCTTTGA TGCGTCGGGC CTCGACGGCC GCGCCGAAGG CCGCGACACG
CTGTGGCCGC TGGACGTCGG CGGCGCGACG CGCTGGATTT CGGCGGTGTC GATGGGCAAT
CCGCATGCGG TGCAGGTCGT TGACGATGTC GAAGCGTATC CGGTGCTGGA AGAAGGCCCG
CTGATCGAGC GCCACGCACG CTTCCCGCAG CGCGTGAACG CCGGCTTCAT GCAGATCGTG
TCGCGCCACG AAGTGAAGCT GCGCGTGTAC GAACGCGGCG CGGGCGAGAC GCTCGCGTGC
GGCACGGGCG CGTGCGCGGC GGTCGCGGCC GGCATCCGGC GCGGCCTGCT CGATTCGCCC
GTGACCGTCC ATACGCACGG CGGCACGCTG ACGATCGGCT GGGACGGCGC GCGCGACGAA
GCCGCCGCGC TGATGATGGC CGGGCCCGCC GCGACCGTGT TCGAAGGCGA GATCGACCTC
ACCGCCTGA
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| Protein sequence | MHGAGNDFVV LDGYSRALPP LTEAQVRALA NRHFGIGADQ LLLVEKPTVD GADFKYRIFN
CDGGEVEHCG NGARCFVKFV SDRGLTDKRS VRVQVMKGLI TLTLQDNGEV VVDMGAPVFA
PAQVPFDASG LDGRAEGRDT LWPLDVGGAT RWISAVSMGN PHAVQVVDDV EAYPVLEEGP
LIERHARFPQ RVNAGFMQIV SRHEVKLRVY ERGAGETLAC GTGACAAVAA GIRRGLLDSP
VTVHTHGGTL TIGWDGARDE AAALMMAGPA ATVFEGEIDL TA
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