| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2975 |
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| Symbol | fliF |
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| ID | 6176938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 3295701 |
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| End bp | 3297464 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641682751 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001809667 |
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| Protein GI | 172062015 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.260042 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTCGC AGGCCAACTC GCTGATCAAC CCCGACGCCC GCACGGGCCT CGCCAGCCCG
GTGCCAGGCG CCACCGCGGC CGCCGCGTTG CCGGGAGCAG GCGGCGCCGG CGCGGACTTC
GGGTTCGGCG GTTTCGCGGA ACGCATCCCC GGCATCTCGC GGATGAAGGG CAACCCGAAG
CTGCCATTCG TGATCGCCGT CGCGTTCGCG ATCGCCGCGA TCACCGCGCT CGTGCTGTGG
AGCCGCGCGC CCGACTATCG CGTGCTGTAC AGCAACCTTT CGGACCGCGA CGGCGGCGCG
ATCATCGCCG CGCTCCAGCA GGCCAACGTT CCGTACAAGT TCGCCGACGC CGGCGGCGCG
ATCCTCGTGC CGTCGAACCA GGTGCATGAA ACGCGCCTGA AGCTCGCCGC GCTGGGCCTG
CCCAAGGGCG GCTCGGTCGG CTTCGAGCTG ATGGACAACC AGAAATTCGG CATCAGCCAG
TTCGCCGAGC AGGTGAACTA CCAGCGCGCG CTCGAAGGCG AGCTGCAGCG CACGATCGAA
TCGATCAACG CGGTGCGCGG CGCGCGCGTG CATCTCGCGA TCCCGAAGCC GTCGGTGTTC
GTGCGCGACA AGGAAGCGCC GAGCGCGTCG GTGTTCGTCG ACCTCTACCC GGGCCGCGTG
CTCGACGAGG GCCAGGTGCA GGCGATCACG CGGATGGTGT CGTCCGGCGT GCCCGACATG
CCGGCGAAGA ACGTGACGAT CGTCGACCAG GACGGCAACC TGCTGACGCA GACCGCCTCG
GCCTCCGGCC TCGACGCGAG CCAGCTCAAG TACGTGCAGC AGGTCGAGCA CAATACGCAG
AAGCGCATCG ATGCGATCCT CGCGCCGATC TTCGGCACCG GCAACGCGCG CTCGCAGGTC
AGCGCCGACA TCGACTTCTC GAAGCTCGAG CAGACCTCGG AAAGCTACGG CCCGAACGGC
ACGCCGCAGC AGGCCGCGAT CCGCAGCCAG CAGACCAGCA GCGCGACCGA GCTCGCGCAG
GGCGGCGCAT CGGGCGTGCC GGGCGCGCTG TCGAACACGC CGCCGCAGCC GGCCTCCGCG
CCGATCGTCG CCGGCAACGG CCAGAACGGC GCGCAGTCGA CGCCCGTCAG CGACCGCAAG
GACCAGACCA CCAACTACGA GCTCGACAAG ACGATCCGCC ACGTCGAGCA GCCGATGGGC
AACGTGAAGC GGCTGTCGGT CGCCGTCGTC GTCAACTACC AGCCGGTCGC GGACGCGAAG
GGCCACGTGA CGATGCAGCC GCTGCCGCCG CCCAAGCTCG CGCAGGTCGA GCAGCTCGTG
AAGGACGCGA TGGGCTACGA CGAGAAGCGC GGCGATTCGG TGAACGTCGT GAACAGCGCG
TTCTCAAGCG TCGGCGATCC GTACGCCGAC CTGCCGTGGT GGCGCCAGCC GGACATGATC
GCGATGGCGA AGGAAGCCGC GAAGTGGCTC GGCATCGCGG CAGCCGCGGC GGCGCTCTAT
TTCATGTTCG TGCGCCCGGC GATGCGCCGC GCGTTCCCGC CGCCCGAGCC GGTCGCCCCG
GCGCTCGCGG CGCCGGACGA TCCGGTCGCG CTCGACGGCC TGCCCGCCCC GGACAAGGCC
GACGAGCCCG ATCCGCTGCT GCTCGGCTTC GAGAACGAAA AGAACCGCTA CGAACGCAAC
CTCGACTACG CGCGCACGAT CGCCCGCCAG GATCCGAAGA TCGTCGCCAC CGTCGTGAAG
AACTGGGTGT CCGATGAACG CTGA
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| Protein sequence | MDSQANSLIN PDARTGLASP VPGATAAAAL PGAGGAGADF GFGGFAERIP GISRMKGNPK
LPFVIAVAFA IAAITALVLW SRAPDYRVLY SNLSDRDGGA IIAALQQANV PYKFADAGGA
ILVPSNQVHE TRLKLAALGL PKGGSVGFEL MDNQKFGISQ FAEQVNYQRA LEGELQRTIE
SINAVRGARV HLAIPKPSVF VRDKEAPSAS VFVDLYPGRV LDEGQVQAIT RMVSSGVPDM
PAKNVTIVDQ DGNLLTQTAS ASGLDASQLK YVQQVEHNTQ KRIDAILAPI FGTGNARSQV
SADIDFSKLE QTSESYGPNG TPQQAAIRSQ QTSSATELAQ GGASGVPGAL SNTPPQPASA
PIVAGNGQNG AQSTPVSDRK DQTTNYELDK TIRHVEQPMG NVKRLSVAVV VNYQPVADAK
GHVTMQPLPP PKLAQVEQLV KDAMGYDEKR GDSVNVVNSA FSSVGDPYAD LPWWRQPDMI
AMAKEAAKWL GIAAAAAALY FMFVRPAMRR AFPPPEPVAP ALAAPDDPVA LDGLPAPDKA
DEPDPLLLGF ENEKNRYERN LDYARTIARQ DPKIVATVVK NWVSDER
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