| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2967 |
|---|
| Symbol | |
|---|
| ID | 6177386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 3288652 |
|---|
| End bp | 3290052 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641682743 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_001809659 |
|---|
| Protein GI | 172062007 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | [TIGR00909] amino acid transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.799342 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.23719 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTCT TCCGCAAGAA AAACGTCGAT CGCATGATCG CCGGCGCGCA TGGCGCCGGG
CTCAAGAAAG CGCTCGGCGC AATCGACCTC ACCTTCCTCG GCATCGGCGC GATCATCGGC
ACCGGGATCT TCGTGCTGAC TGGCACGGGC GCCGTTCAGG CCGGCCCCGC GCTGATGCTG
TCGTTCGTGA TCGCGGCGAT CGCGTGCGGC CTCGCGGCGC TGTCGTACGC CGAATTCGCG
TCGACGATTC CGGTCGCGGG CTCGATCTAC ACGTACTCGT ACGCGACCCT CGGCGAGCTC
GTCGCATGGA TCATCGGCTG GGACCTGATG CTCGAATACG GCCTCGCGGC GTCGGCCGTG
TCGGTCGGCT GGTCGGGCTA CCTCCAGTCG CTGCTGCAGG GCTTCGGGCT CGCGCTGCCC
ACCGTGCTGA CGGCCGCGCC CGGCGCGATC CCCGGCGTCG TCACGTGGTT CAACCTGCCC
GCGTTCCTCG TGATGCTGGT GATCACGACG CTGCTGTCGA TCGGCATCCG CGAGTCGACC
CGCATCAACA ACATCATGGT GTTCATCAAG GTGTCGGTGG TGCTGCTCGT GATCGCGGTC
GGCCTGTTCC ACGTGACGCC CGCGAACTGG AAACCGTTCA TGCCGCACGG CTGGAACGGC
GTGTTCGGCG CGGCGGCCGT GATGTTCTTC GCGTTCATCG GCTTCGACGC GGTGTCGTCG
GCGGCCGAGG AAGTGAAGAA TCCGAAGCGC GACCTGCCGA TCGGCATCAT CGCGTCGCTC
GCGGTGTGCG CGGTGCTGTA CGTGACGGTC GCGGCGGTCG CGACCGGCAT CGTGCCGGCG
GCCCAGTACG CGAACGTGTC GCACCCGATC TCGTACGCGC TGCAGATCGC CGGCGAGAAG
TGGGTCGCGG GCTTCATCGA TCTCGGCGCG GTGCTCGGCA TGCTGACCGT GATCCTCGTG
ATGAGCTACG GCCAGACGCG GATCATCTTC GCGATGTCGC GCGACGGGCT GCTGCCGGCG
ATGCTGTCGC GCGTGCATCC GCGCTTCGCG ACGCCGTTCC TGACGACCTG GCTCGTCGGC
CTGTTCTTCG GGCTGATCGC CGCGCTCGTG CCGCTGAACG TGCTCGCCGA GCTGATCAAC
ATCGGCACGC TCGCCGCGTT CTCGATGGTG TCGATCGCGG TGCTGGTGCT GCGCCGCACG
CACCCGGAGC TGCCGCGCGC GTTCCGCTGC CCGGGCGTGC CGGTGGTGCC GATCCTCGCG
GTCGCCGCGT GCCTGTTCCT GATGCTGAAC CTGCAGCCCG TCACGTGGGC CGCGTTCGGC
ATCTGGCTCG TGATCGGCCT CGTGATCTAC TTCCTGTATT CGCGGCACCA CTCAAAGCTC
GCCCGCGGCC ACGCGGACTG A
|
|---|
| Protein sequence | MSLFRKKNVD RMIAGAHGAG LKKALGAIDL TFLGIGAIIG TGIFVLTGTG AVQAGPALML
SFVIAAIACG LAALSYAEFA STIPVAGSIY TYSYATLGEL VAWIIGWDLM LEYGLAASAV
SVGWSGYLQS LLQGFGLALP TVLTAAPGAI PGVVTWFNLP AFLVMLVITT LLSIGIREST
RINNIMVFIK VSVVLLVIAV GLFHVTPANW KPFMPHGWNG VFGAAAVMFF AFIGFDAVSS
AAEEVKNPKR DLPIGIIASL AVCAVLYVTV AAVATGIVPA AQYANVSHPI SYALQIAGEK
WVAGFIDLGA VLGMLTVILV MSYGQTRIIF AMSRDGLLPA MLSRVHPRFA TPFLTTWLVG
LFFGLIAALV PLNVLAELIN IGTLAAFSMV SIAVLVLRRT HPELPRAFRC PGVPVVPILA
VAACLFLMLN LQPVTWAAFG IWLVIGLVIY FLYSRHHSKL ARGHAD
|
|---|
| |