| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2956 |
|---|
| Symbol | |
|---|
| ID | 6176399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 3276976 |
|---|
| End bp | 3278604 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641682732 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001809648 |
|---|
| Protein GI | 172061996 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATACA ACCGTCTGTT GCACACCCTG CGTGTTACCG CCATTGCAGG CGTGGCAGCG
GCATCGCTCG GCGTCGCGGG TTCTGCATTC GCACAGATCC CGAACAAAAC GCTCGTCTAC
TGCTCAGAAG GCAGCCCGGC GGGTTTTGAT TCCGCGCAAT TCACGACCGG CGTCGATTTC
ACGGCCGCCA CGTTCACCGT CTACAACCGG CTCGTCGAAT TCGAGCGCGG CGGCACGAAG
GTCGAGCCGG GCCTCGCGGA GAAGTGGGAC GTCTCGTCCG ACGGCAAGGT GTACACGTTC
CACCTGCGTC ATGGCGTGAA GTTCCACACG ACCGACTTCT TCAAGCCGAC GCGTGAATTC
AACGCGGACG ACGTCGTGTT CTCGTTCGAG CGCATGCTCG ATCCGAACCA GGCGTTCCGC
AAGGCCTACC CGGTGTCGTT CCCGTACTTC ACCGACATGG GCCTCGACAA GCTGATCACG
AAGATCGAGA AGGTCGATCC GTACACCGTG AAGTTCACGC TGGCCGAACC GAACGCACCG
TTCATCCAGA ACATGGCGAT GGAATTCGCG TCGATCCTGT CGGCCGAATA CGGCGACCAG
CTGATGAAGG CCGGCAAGGC CGCCGACATC AACCAGAAGC CGGTCGGCAC GGGCCCGTTC
ATCTTCCGCA GCTACACGAA GGACGCGACG ATCCGTTTCG ACGGCAATCC TGACTATTGG
AAGAAGGGCG CGGTGAAGCT GTCGAAGCTG ATCTTCTCGA TCACGCCCGA TCCGGGCGTG
CGCGTGCAGA AGATCAAGCG CAACGAATGC CAGGTGATGA GCTATCCGCG GCCGGCCGAC
ATCGCGACGC TGAAGGCCGA CTCGGGCATC GACATGCCGT CGCAGCCGGG CTTCAACCTC
GGCTACCTCG CGTACAACGT CGAGCACAAG CCGGTCGACA AGCTCGAGGT GCGTCAGGCA
CTCGACATGG CGATCAACAA GAAGGCGATC CTCGAATCCG TCTATCAGGG CGCGGGCCAG
GCCGCCACCG CGCCGGTGCC GCCGACCCAA TGGTCGTACG ACAAGAACCT GAAGATGCCC
GCGTACGACA CCGCGAAGGC GAAGGCGCTG CTCGCGAAGG CAGGCTTCCC GAACGGTTTC
GACATCACGC TGTGGGCCAT GCCGGTGCAG CGCGCGTACA ACCCGAACGC CCGCCTGATG
GCCGAGATGA TCCAGGCCGA CTGGGCGAAG ATCGGCGTGA AGGCGAAGAT CGTCACGTAC
GAGTGGGGCG AGTACATCAA GCGCGCGCAC TCGGGCGAGC AGGACACGAT GCTGATCGGC
TGGACGGGCG ACAACGGCGA CCCGGACAAC TGGCTCGGCA CGCTGCTCGG CTGCGAGGCG
ATCAAGGGCA ACAACTTCTC GCACTGGTGC TACAAGCCGT TCGACGAGCT GGTCCAGAAG
GGCCGCACGA CGACGGGCCA GGACGCGCGC ACGAAGATCT ACACGCAGGC TCAGCAGATC
TTCGCGCAGC AGCTGCCGTT CTCGCCGATC GCGAACTCGA CGGTCTACCA GCCGGTACGC
AAGAACGTGG TCGACATGCG CATCGAGCCG CTCGGCTATG CCCGCTTCGA CGGTGTCGGC
GTGAAGTAA
|
|---|
| Protein sequence | MEYNRLLHTL RVTAIAGVAA ASLGVAGSAF AQIPNKTLVY CSEGSPAGFD SAQFTTGVDF
TAATFTVYNR LVEFERGGTK VEPGLAEKWD VSSDGKVYTF HLRHGVKFHT TDFFKPTREF
NADDVVFSFE RMLDPNQAFR KAYPVSFPYF TDMGLDKLIT KIEKVDPYTV KFTLAEPNAP
FIQNMAMEFA SILSAEYGDQ LMKAGKAADI NQKPVGTGPF IFRSYTKDAT IRFDGNPDYW
KKGAVKLSKL IFSITPDPGV RVQKIKRNEC QVMSYPRPAD IATLKADSGI DMPSQPGFNL
GYLAYNVEHK PVDKLEVRQA LDMAINKKAI LESVYQGAGQ AATAPVPPTQ WSYDKNLKMP
AYDTAKAKAL LAKAGFPNGF DITLWAMPVQ RAYNPNARLM AEMIQADWAK IGVKAKIVTY
EWGEYIKRAH SGEQDTMLIG WTGDNGDPDN WLGTLLGCEA IKGNNFSHWC YKPFDELVQK
GRTTTGQDAR TKIYTQAQQI FAQQLPFSPI ANSTVYQPVR KNVVDMRIEP LGYARFDGVG
VK
|
|---|
| |