| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2797 |
|---|
| Symbol | |
|---|
| ID | 6176356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 3101251 |
|---|
| End bp | 3102213 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641682574 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001809490 |
|---|
| Protein GI | 172061838 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0984136 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.799433 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTGA ACGCGCTGAC GCTGCTCGTC GAGATTCTCG ACGCGGGCAA TCTGAGCAAG
GCCGCGCAGC GGCTCAAGGT GAGTCGCGCG AACGTCAGCT ACCGGCTGAA CCAGCTCGAA
CGCTCGATCG GCCAGCAGCT CGTGCGCCGC ACGACGCGCC GCATCGAGCC GACCGAGATC
GGGCTGAAGC TGTACGAGCA CGGCCGGCGC ATCCGCAACG AACTGCTCGC CGCGCAGGAG
TCGGTGACGA CGCTCGGCCA GGACCTGCAG GGTCGCGTGC GACTGTCGGT GCCGAGCGGC
TACGGGCAGA TGGTGATGTC CGACTGGCTG CTCGCGTTCA AGCGGCTGCA TCCGGGCATC
GTGCTCGACG TGGTGTTCGA GAATCGCGTG GAAGACCTGA TGCGCGACGA GATCGACATC
GCGGTGCGCG TGATGCCGGA GCCGCCGCAG AACCTCGTCG CGCGCGACAT GGGGGCGGTG
CGCTACGTTG CGTGCGCGTC GGCCGCGTTC GCGGCCGCGC ACGGGATGCC GGCGAGCCTC
GGCGCGCTGG CCGCCGCGCC GGTCGTCACC GCGACGGTGA TGGGGAGGCA GTTGCGGATC
GCCGCGTATC TTGGCGACGA GCGCCATGAG GTGCTGCTCG AGCCGACGCT GATTTCGGAG
AACTTCCTGT TCCTGCGCCA GGCGATCCTC GCCGGGATCG GCGTCGGCAT CGTGCCCGAC
TACGTGGTGC AGGACGACAT GCGGCGCGGC ACGGTCGTCA CGTCGCTCGA CGCGTACCGG
CTCAGCATCT TCGGCACGCA CATGTACATG CTGTACATGC CGAACCGGCA CCACACGCGT
GCGACCGCAA CCTTCATAGA GTTCATCCTC GAACAGGCCG GAAAGACCGG CCGGGGCGGG
CCGGGCGCGA TGCGTCAGGG TTTCCTGTCG GATGACAACC CGCCGGCCGC GCGGCGACAA
TAG
|
|---|
| Protein sequence | MDLNALTLLV EILDAGNLSK AAQRLKVSRA NVSYRLNQLE RSIGQQLVRR TTRRIEPTEI
GLKLYEHGRR IRNELLAAQE SVTTLGQDLQ GRVRLSVPSG YGQMVMSDWL LAFKRLHPGI
VLDVVFENRV EDLMRDEIDI AVRVMPEPPQ NLVARDMGAV RYVACASAAF AAAHGMPASL
GALAAAPVVT ATVMGRQLRI AAYLGDERHE VLLEPTLISE NFLFLRQAIL AGIGVGIVPD
YVVQDDMRRG TVVTSLDAYR LSIFGTHMYM LYMPNRHHTR ATATFIEFIL EQAGKTGRGG
PGAMRQGFLS DDNPPAARRQ
|
|---|
| |