| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2782 |
|---|
| Symbol | |
|---|
| ID | 6176291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 3081872 |
|---|
| End bp | 3083383 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641682559 |
|---|
| Product | ammonium transporter |
|---|
| Protein accession | YP_001809475 |
|---|
| Protein GI | 172061823 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0900246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAAC TTCTGATGTC CCTGCTGATG GCAGGCTCGC TGATCGCGGC CGGTGTCGGC
CCCGCGCTCG CCGACGACGC GGCTTCGGCC GCGTCCGCGC CCGCCGCAAC GGCGTCCGAT
GCAACGGCAG CCGCCACGCC GGCCGCTTCG GCCGCTTCGG CCCCGGCCGC CACCGACGCT
TCGGCGCCTG CTGCCGCCGC CCCCGCGTCG GCCGCCGACG CATCGGCTGC CGCGGCTGCG
TCCGCGCCGG CCGCACCCGC CGCGCCGACC GCGCCGTTCT CCGTCGATTC GTCGAAGATC
AGCGCCGGCG ACACCGCGTG GATGCTGACG TCCACCGCGC TCGTGCTGTT CATGACGATC
CCCGGCCTCG CGCTGTTCTA CGCGGGCATG GTCCGCAAGA AGAACGTGCT CGCGACCGTG
ATGCAGAGCT TCGCGATCAC CGCGCTGATC ACGGTGCTGT GGACGGTGGT CGGCTACAGC
CTCGCGTTCA CGCCGGGCAA CGGCTTCATC GGCGGCCTGT CGCGTGTGTT CCTGCACGGG
ATGACCTACG TGAAGGGCGA CAAGGCGACC ACACTGACCG TCAGCCACCT GGCGACGACG
ATTCCGGAAT CGGTCTACTT CGTCTACCAG ATGACGTTCG CGATCATCAC GCCGGCGCTG
ATCTGCGGCG CGTTCGCCGA CCGGATGAAG TTCTCGGCGA TGCTCGTGTT CATGACGCTC
TGGTCGCTGA TCGTCTACGT GCCGATCGCG CACATGGTTT GGGAGCCGAC CGGCTGGCTG
TCGGCGGACG GCGTGCTCGA CTTCGCGGGC GGCACGGTGG TGCACATCAA CGCCGGTATC
GCGGGCCTCG TGTCGTGCCT GATGCTCGGC AAGCGCGTCG GCTTCGGCCG TGAATCGATG
GCGCCGCACA ACCTCGTGCT GACGATGATC GGCGGCTCGA TGCTGTGGGT CGGCTGGTTC
GGCTTCAACG CGGGTTCCGC GGTCGCGGCC GACGGCCGTG CCGGCTTCGC GATGCTGACG
ACGCAAATCG CGACGGCGTG CGCGGCGCTC GGCTGGATGT TCGCCGAGTG GCTCACGCAC
GGCAAGCCGT CGGTGCTCGG CATCGTCTCG GGTGCGGTCG CGGGTCTCGT CGCGATCACG
CCGGCGGCCG GCTTCGTCGG CGTGCCGGGT GCGCTCGTGA TCGGCATCGC GGCCGGCGTC
GTGTGCTACT GGTCGGCGAC GTGGCTCAAG TCGAAGCTCG GCTACGACGA TTCGCTCGAC
GCGTTCGGCG TGCACGGCGT GGGCGGGGTG CTCGGTGCAC TGCTGACCGG CGTGTTCGCG
GTCAAGGACA TCGGCGGTTT CGACGGCAGC CTGCTGCTGC AGGCGAAGGG CGTGCTGATC
ACGCTGGTAT ACAGCGGCGT GCTGAGCTTC GTGCTGCTGA AGCTGATCGA CCTGACGATC
GGACTTCGCG TGAGCGAGGA GGAAGAGCGC GAAGGCCTCG ACGTGGTGCT GCACGGCGAG
CACGTCGAAT AA
|
|---|
| Protein sequence | MRKLLMSLLM AGSLIAAGVG PALADDAASA ASAPAATASD ATAAATPAAS AASAPAATDA
SAPAAAAPAS AADASAAAAA SAPAAPAAPT APFSVDSSKI SAGDTAWMLT STALVLFMTI
PGLALFYAGM VRKKNVLATV MQSFAITALI TVLWTVVGYS LAFTPGNGFI GGLSRVFLHG
MTYVKGDKAT TLTVSHLATT IPESVYFVYQ MTFAIITPAL ICGAFADRMK FSAMLVFMTL
WSLIVYVPIA HMVWEPTGWL SADGVLDFAG GTVVHINAGI AGLVSCLMLG KRVGFGRESM
APHNLVLTMI GGSMLWVGWF GFNAGSAVAA DGRAGFAMLT TQIATACAAL GWMFAEWLTH
GKPSVLGIVS GAVAGLVAIT PAAGFVGVPG ALVIGIAAGV VCYWSATWLK SKLGYDDSLD
AFGVHGVGGV LGALLTGVFA VKDIGGFDGS LLLQAKGVLI TLVYSGVLSF VLLKLIDLTI
GLRVSEEEER EGLDVVLHGE HVE
|
|---|
| |