| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2754 |
|---|
| Symbol | |
|---|
| ID | 6176003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 3057256 |
|---|
| End bp | 3058158 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641682531 |
|---|
| Product | protoheme IX farnesyltransferase |
|---|
| Protein accession | YP_001809447 |
|---|
| Protein GI | 172061795 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
|---|
| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.628153 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGCA CCCTCTCCCA ATCGCCCGGT AGCCGGTTTT CGCAGTACAT GGCGCTGACG
AAGCCGCGTG TCACGCAGCT CGCGGTGTTC TGCGCGGTGA TCGGCATGTT TCTCGCGACG
CCGGGCATGG TGCCGTGGCA TGTGCTGATC GGCGGCACCA TCGGCATCTG GCTGCTGGCC
GGCGCCGCGT TCGCGATCAA CTGCCTCGTC GAACAGAAGA TCGACGCGAT GATGCGCCGC
ACCGCGTGGC GTCCGTCCGC GCGCGGCGAG ATCACGACGC CGCAGATCCT GCTGTTCTCG
GCGGTGCTCG GCAGCGCCGG CGCCTGGACT CTGTATACGT TCACGAACCC GCTGACGATG
TGGCTGACGA TCGCGACGTT CGTCGGCTAC GCGGTGGTCT ATACGCTGCT GCTCAAACCG
ATGACGCCGC AGAACATCGT GATCGGCGGT GCGTCGGGCG CGATGCCGCC GGCGCTCGGC
TGGGCCGCGG TCACCGGCGC GGTGCCCGGC GACGCGTGGA TCCTCGTGCT GATCATCTTC
GTGTGGACGC CGCCGCATTT CTGGGTGCTC GCGCTCTATC GCCGCAAGGA TTACGAAAAC
GCGGGCCTGC CGATGTTGCC GGTCACGCAC GGCGAGAAAT TCACGCGGCT GCACATCCTG
CTGTACACGG TGATCCTGTT CGCGGTCACG CTGATGCCGT TCATCTCCGG GATGAGCGGC
GTCGTCTACC TGGCGAGCGC GGTGCTGCTC GGCGCGGTGT TCCTCGCGTA TGCGTGGAAG
ATCTACCGCG ATTATTCGGA CGAACTCGCC CGCAAGGCTT TCCGCTACTC GATCGTCTAC
CTGTCGCTGC TGTTCGCCGC GCTGCTCGTC GATCACTATG CGCGCCCGCT GCTCGGCGTG
TAA
|
|---|
| Protein sequence | MQSTLSQSPG SRFSQYMALT KPRVTQLAVF CAVIGMFLAT PGMVPWHVLI GGTIGIWLLA
GAAFAINCLV EQKIDAMMRR TAWRPSARGE ITTPQILLFS AVLGSAGAWT LYTFTNPLTM
WLTIATFVGY AVVYTLLLKP MTPQNIVIGG ASGAMPPALG WAAVTGAVPG DAWILVLIIF
VWTPPHFWVL ALYRRKDYEN AGLPMLPVTH GEKFTRLHIL LYTVILFAVT LMPFISGMSG
VVYLASAVLL GAVFLAYAWK IYRDYSDELA RKAFRYSIVY LSLLFAALLV DHYARPLLGV
|
|---|
| |