| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2717 |
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| Symbol | |
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| ID | 6176300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 3015108 |
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| End bp | 3016931 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641682493 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001809410 |
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| Protein GI | 172061758 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0254637 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.13639 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCTGC CCTCGAAGCT GCTTCTGAAG CGCCCCGCCG CCGAGCACGG CGCGCGCGTC
TTCCCGGTCC GCCGTGCGCT CGGCGCCGCG CTGTTCGCCG CCTGGACCCT CACCGCCTTC
CCGGCTCACG CGCAGGATCC GGCATCGGAC GACGCGCAGC CGCAGGGCGC GTTCGAGCAT
GTGATGGCGG ACGAGCAGAA GAATCTCCCC GGCGTTCCGC TGACGAGCCA GATCGTCTAC
CAGGTGCTGG CCGCCGAAGT CGCGCTCCAG CGCAACCAGC CGGCGCCGGC CTACCAGACC
TATCTCGCCC TCGCCCGCGA CACGCGCGAT CCGCGCATGG CGCAGCGTGC GACCGAGATC
GCACTGGGCG CGCAAAGCCC GGCCGATGCA CTGTCCGCGG CCAATCTGTG GCGCCAGTAC
GCGCCCGATT CGAATCGCGC ATCGCAAGTC GACGCCGCGC TGCTGGTGCT CGCCGGCAAG
CCGGCCGACG CGCAGCCGAT GCTCGCGCGC GAGCTGGCCC GCGCGACCGG CGAAACGCGC
GGCCCCGCGA TCCTCGCGCT GCAGGCGCTG CTGGTACGCG GCTCCGACCG CGTCGGCGGC
CTCGCGGTGC TGAAGGACAT GCTGAAGAAC GACATGAACC GCCCCGAGGC GCAGCTCGCG
ATCGCGCGGC AGCAACTGGC GGTCGACGAC AAGGAAGGCG CGGCGCGCTC GCTGAAGCAG
GCGCTGCAGA TCCGCCCTGA CTACCTGCCG GCGGCGCTGA TGCTGTCGCA GATGGGCCCC
GCGGAGCGCG CGGCCGGCAT CGCGTCGTTC GAGAAATATG TTCAGCAGAA TCCGAAGTCG
CGCGATGGGC GGCTCGCGCT GTCGCAGCTC TATCTCGCCG ACGACCGCCT CGACGACGCG
CAGAAGCAGT TCGAGACGAT GCGCAAGCTC GACTCGAAGG ACCCGACGCC GCTGATGGCG
CTCGCGCTGA TCAGGATCCA GCAGAAGAAG CTCGACGACG CGAGCGCGTA CCTGAAACAG
TACGTGCAGC TCGGCGACAA GCAGTCGAAC CTCGACGTCG GCCAGGGCTA CATCTACCTC
GCGCAGATCT CGATCGAGCA GGGCAACGAC GCGCAGGCGT CGCAATGGCT CGACAAGGTC
GACCAGACGA GCCAGCACTA TCTGCCGGCG CAGATCACGC GCGCGCAGCT GCTGCAGAAA
CAAGGCAAGA CCGACGCGGC CCGCAAGGTG CTCGACGATC TGCCGATCAG CGATCCGCGC
GATGCGGCCG TGGTCGCGCG CACCGACGCG TCGATCCTGT TCACAGCGAA GCGCTATCCG
GAAGCCGAGG CACGGCTCGG CCAGGCGGTC CAGGACTTCC CGGACGATCC CGACCTGCGC
TACGACTACG CGATGGCGGC CGAAAAGACG GGCCACTACG CGACGATGGA AAAGCAGCTG
CGCGAGCTGA TCCGCACGCA GCCCGACAAC CCGCAGGCGT ACAACGCGCT CGGCTATTCG
CTGGCCGATC GCAATCAGCG CCTGCCGGAG GCCAGCAAGC TGATCGACAA GGCCCTGTCG
CTCGCGCCGA ACGATGCGTA CATCATGGAC AGCCTCGGCT GGGTGAAGTA CCGGATGGGC
GACACGACCG GCGCGGCCAA GGTGCTGCAG CGCGCGTTCG AGTTGCAGCC GAACGCCGAG
ATCGGCGCGC ACCTCGGCGA AGTGCTGTGG AAAAGCGGCG CGCAGGACGA CGCGCGCATC
GCATGGCGCG CCGCGCAGAA GCTCGAGCCC GACAACGACA CGCTCGTGCA GACGCTGAAG
CGCCTGCAGA TCAACGGCCT CTGA
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| Protein sequence | MTLPSKLLLK RPAAEHGARV FPVRRALGAA LFAAWTLTAF PAHAQDPASD DAQPQGAFEH
VMADEQKNLP GVPLTSQIVY QVLAAEVALQ RNQPAPAYQT YLALARDTRD PRMAQRATEI
ALGAQSPADA LSAANLWRQY APDSNRASQV DAALLVLAGK PADAQPMLAR ELARATGETR
GPAILALQAL LVRGSDRVGG LAVLKDMLKN DMNRPEAQLA IARQQLAVDD KEGAARSLKQ
ALQIRPDYLP AALMLSQMGP AERAAGIASF EKYVQQNPKS RDGRLALSQL YLADDRLDDA
QKQFETMRKL DSKDPTPLMA LALIRIQQKK LDDASAYLKQ YVQLGDKQSN LDVGQGYIYL
AQISIEQGND AQASQWLDKV DQTSQHYLPA QITRAQLLQK QGKTDAARKV LDDLPISDPR
DAAVVARTDA SILFTAKRYP EAEARLGQAV QDFPDDPDLR YDYAMAAEKT GHYATMEKQL
RELIRTQPDN PQAYNALGYS LADRNQRLPE ASKLIDKALS LAPNDAYIMD SLGWVKYRMG
DTTGAAKVLQ RAFELQPNAE IGAHLGEVLW KSGAQDDARI AWRAAQKLEP DNDTLVQTLK
RLQINGL
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