Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_2617 |
Symbol | |
ID | 6176357 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 2905527 |
End bp | 2907164 |
Gene Length | 1638 bp |
Protein Length | 545 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641682393 |
Product | TPR repeat-containing protein |
Protein accession | YP_001809310 |
Protein GI | 172061658 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGACGATT CGAACGACTT CCTCATTCCG CTGATCCCGC CGCTGCTCGC CATGCTCGGG CAGGCCGCCG ACGCGCACGC GCGCGGCGAG CACGATGCGC ACGCGCTGTG GCTTGCCGCC GCCGGCCATC TGCACGCGGT CGACATGGCC GCGCTCGCAC AGCTCACGTC GGCGCTCGTC GCGCGACAGC GCACGGCCGA CGCGCTCGCG CTGGCCGAAC GCGCGGTGCG CGTGCATCCG GGCGCCGATG CCCGTTTCAA TCACGGCTAT GTGCTGCAGA TGCTCGGCCG TCACGCCGAG GCCGTCGCGC CGTATCGCGC CGCCTATGCG CTCGATCCGC GCTGGCCCTC GCTGCGCAAC AACCTCGCGA TCGCGCTGCG GCTGTCGGGT GGCGACCGCA ACGAGGAAAT CGCGCTGCTC GACGCGGCCG TGGAGGCCGA TCCGCTCGAC GTGCAGGCGT GGATCAACCT GGTCGTCGCG CGGCTCGCGG CACAGGATCT CGACGGCGCG CTCGCCTGCG CGGCGCGGCT CGCGCAGATC GCGCCCGACA ATGCGCTCGC GCTGAACAAC ATCGCGATGG CGATGAAGGA AGCGCAGCGC TGGGACGACG CCGAGCGCTA CGCGGCGCGT GCATGCCAGC TGGCGCCCGA CGACGCGTCG TTCCGTTTCA ACCTCGCGAT CATCCAGCTC GTGCGCGGCA ACTACGCGGC CGGCTGGCGC GGCCACGAGG CGCGCTGGGA CGGTGCGGGC GAGTTGCGCG GCCGCCGGCC GGCGCTGCCG GGCCCGCGCT GGCAGGGCGA GCCGCTCGCG GGCAAGACGC TGCTCGTGTG GGGCGAGCAG GGGCTCGGCG ACGTGCTGCA GTTCGCGCGC TTCGTCGCGC CGCTCGCCGA GCGCGTGCAC CGCGAGGGCG GCCGGCTCGT GTGGAACACG TTTCCGCAGG TGGGCACGCT GATGCAGCGC AGCCTCGGTG CGCATGCGGA CGCCTTCAGC GCGGGCGGCA GCGTCGACGA ACTGCCCGCC TTCGACTACG AAGTGCCGTT GATCGGGCTG CCGCTGATGC TCGGGATGGA GACGTCGACG CTTGGCGAGT CGGTGCCGTA CCTGCATGCC GACCGCCACG CGCGCGATGC GTGGCGCGCG CGGCTCGCGG GCGATGGCCG GTTGAACGTC GGGCTCGTCT GGACGGGCAG TGCGGGACAC CAGCGCAATC CGTTCCGGCG CGTCGGGCTC GATCGCTACG CCGATGCATT TCGCGGTATC GACGGCGTCA CGTTCCATTC GCTGCAGCCG GGCGCGGATG CGGATGTCGC CGCGGCGCGC GCGGCCGGTT TCGCGATCAA GGACTACACG GCCGAACTGA AGAGTTTCGA CGATACGGCC GCGTTCATCG GCGCGCTGGA TCTGGTGATC ACCGTGTGCA CGTCGGTCGC GCATCTGGCG GGCGCGCTGG GCGCGCGCAC CTGGGTGCTG CTCGACGTGA ATCCGCACTG GCCGTGGCTG CTCGAACGCA CCGACAGCCC GTGGTATCCG ACCGCCACGC TGTACCGGCA GCCGACGTTC GGCGCGTGGG CGCCGGTGAT GGCGGCGCTG GGGCGGGATC TGCGCGGCCT GGCCGCGCAG GCGAAGCGGC CGGCCTGA
|
Protein sequence | MDDSNDFLIP LIPPLLAMLG QAADAHARGE HDAHALWLAA AGHLHAVDMA ALAQLTSALV ARQRTADALA LAERAVRVHP GADARFNHGY VLQMLGRHAE AVAPYRAAYA LDPRWPSLRN NLAIALRLSG GDRNEEIALL DAAVEADPLD VQAWINLVVA RLAAQDLDGA LACAARLAQI APDNALALNN IAMAMKEAQR WDDAERYAAR ACQLAPDDAS FRFNLAIIQL VRGNYAAGWR GHEARWDGAG ELRGRRPALP GPRWQGEPLA GKTLLVWGEQ GLGDVLQFAR FVAPLAERVH REGGRLVWNT FPQVGTLMQR SLGAHADAFS AGGSVDELPA FDYEVPLIGL PLMLGMETST LGESVPYLHA DRHARDAWRA RLAGDGRLNV GLVWTGSAGH QRNPFRRVGL DRYADAFRGI DGVTFHSLQP GADADVAAAR AAGFAIKDYT AELKSFDDTA AFIGALDLVI TVCTSVAHLA GALGARTWVL LDVNPHWPWL LERTDSPWYP TATLYRQPTF GAWAPVMAAL GRDLRGLAAQ AKRPA
|
| |