| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2586 |
|---|
| Symbol | |
|---|
| ID | 6179001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 2871236 |
|---|
| End bp | 2872123 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641682362 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001809279 |
|---|
| Protein GI | 172061627 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAAC TCCTGCCAAT GCGGCTATTC ATCAAGGTGG CCGAACTTCA TAGTTTCGCG
CGTGCAGCCA CGGAACTGAA CATCTCCAAC TCGTCGGCTA CCCGCCTCAT CATGGGCATC
GAGGACCGGC TCGGCGCACG CCTGCTGAAC CGCACGACGC GCAGCCTGTC GCTCACCGAT
GCCGGTCATC TGTATCTCGC GCAGATCCGT CACGTGGTCG AGGAAATCGA CCGCGTCGAG
GAAACGATCG CGTCGATGCA TCACGAGCCG ATCGGGTCGC TGAAGATCGC CGCGCCGGTC
ATGTTCGGCA TGCACGTGCT CGCCCCGGCG ATCGATGCAT TCAAGACGCT GCATCCGGCC
ATCGTGCCGG AAGTCACGAT CGTCGACCGC CATGTCGATC TCGTATCGGA AGGCTTCGAC
GTCGGGCTGC TGCTGTCGCA GCGCATCAGC ACCAACACGC TGGTGACGCG GCCGCTCACG
CGACTCAAGC GGATCGTCTG CGCGGCGCCC CGGTATGTCG AAGCCCACGG CGCACCGATC
CATCCGCACG ATCTCGCGTC GCACGCGTGC CTCACGTTCC ATGCCGACTT CGCGGGCGAA
TACATGTCGT TCGATCACGA GCCGACGCGC GTCGCGGTGC GACCGAACAA ATCCGCATCG
TCGAACAACA TCGGGTTGAT CCGGAACTGG GCGTTGTCGG GCATGGGCAT CGCGGTGCTG
CCCGACTTCC TCGTCGAAGC GGATCTCGCC GACGGACGAT TGCTCGCGCT GCTTCCCGAC
TATCGGCTCG ATGACCTCGA GATGAATATC GCGTACCCGA GCCGGCGGCA CTTTCCGCGC
AAGACGCGGC TTTTCGTCGA TCACCTGGTC GAGTATTTCG TCAGGTGA
|
|---|
| Protein sequence | MDELLPMRLF IKVAELHSFA RAATELNISN SSATRLIMGI EDRLGARLLN RTTRSLSLTD
AGHLYLAQIR HVVEEIDRVE ETIASMHHEP IGSLKIAAPV MFGMHVLAPA IDAFKTLHPA
IVPEVTIVDR HVDLVSEGFD VGLLLSQRIS TNTLVTRPLT RLKRIVCAAP RYVEAHGAPI
HPHDLASHAC LTFHADFAGE YMSFDHEPTR VAVRPNKSAS SNNIGLIRNW ALSGMGIAVL
PDFLVEADLA DGRLLALLPD YRLDDLEMNI AYPSRRHFPR KTRLFVDHLV EYFVR
|
|---|
| |