Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_2582 |
Symbol | |
ID | 6177678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 2865679 |
End bp | 2866881 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641682358 |
Product | porin |
Protein accession | YP_001809275 |
Protein GI | 172061623 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGAAGA AGCTGTTGGC CGGCGCGGGT GTCGCGCTGA TCGCGGGTGC GGCGCACGCC CAGAGCAGCG TCACGCTGTA CGGGATTATC GATGAAGGGC TGACCTATGC GAGCAACATC GCGACGCCCG GCCCGCACGG CGCGGTGAGC GGCAAGCCCG CGCTGCGAAT GCTGGGCGGC GTGCAGCAGG CGAGCCGCTG GGGGCTGCGC GGCAGCGAGG ATCTCGGCGG CGGCCTGGCC GCGGTCTTCA CGCTCGAGAA CGGTTTCGAT CCGAGCAGCG GCAGGCTCGG GCAGGGCGGG CTGATGTTCG GCAAGAAGGC GTTCGTCGGG CTGTCGGGGC CGTTCGGCAC CGTCACGCTC GGGCGGCAGT ACGACTCCAA CGTCGATATC CTCGGGCCGC TCGAGGCCGC CGCGCTGTTC GGCGGCTACA TGGTCGCGCA CCCCGGTGAC CTCGACAACG TGAACAACGC GAACTCGACC AACAACGCGA TCAAGTTCAC GAGCAAAGAC TACGGCGGGG CTCGCGTCGC GGCGATGTAC GGGGTGGGCG GCATCGCGGG CGCGGCGACG CGCAACCAGG TGTGGTCGGC CACCGTCGGC TACACGCGCG GGCCGCTCGC GGTGGCGGCC GGCTATCTGA ATGCGCGCAA TCCGAACGTG TCGTTCTTCG GCACGACCGG CAGCCCCGCG CCGACCGTGG GCGGCGTGCC GGGCAGCAAC ATGCTGTCGC CGGTGTATTC GGGCTATGCG TCCGCGCGCA CGCTGCAGGT CGCGGTGGTG GGCGGCACCT ATGCGATCGG CGCGATGACG CTCGGCGCGA TGTATACGAA CACGTCGTTC CGCCAGCTCG GTGACCTGTC GTCCGGGCCG AACCCGGGCG GCGTGTCCGG CAACGCGGTG TTCAACAACG TGGAGGCGAG CGTGCGCTAC CAGTTCATGA CCTCGCTGTT CGGCGGCGTG GCGTACGACT ACACGCATGG CGGCGGCGTG AACGGCCGCG ACGGTGCGAC GTATCACCAG GTCGCGGCGG GGCTCGACTA CTTCCTGTCG AAGCGCACCG ACGTCTACGT GAGCGCCGTT TATCAGCGCG CATCGGGCAC CGACTCGACG GGGCACGTCG CTGTCGCGGC GATCAACGGG CCCGGTGCAT CCGCGAACGA TCGGCAGCTG CAGGCGCGCG TCGGCATGCG GCACAAGTTC TGA
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Protein sequence | MKKKLLAGAG VALIAGAAHA QSSVTLYGII DEGLTYASNI ATPGPHGAVS GKPALRMLGG VQQASRWGLR GSEDLGGGLA AVFTLENGFD PSSGRLGQGG LMFGKKAFVG LSGPFGTVTL GRQYDSNVDI LGPLEAAALF GGYMVAHPGD LDNVNNANST NNAIKFTSKD YGGARVAAMY GVGGIAGAAT RNQVWSATVG YTRGPLAVAA GYLNARNPNV SFFGTTGSPA PTVGGVPGSN MLSPVYSGYA SARTLQVAVV GGTYAIGAMT LGAMYTNTSF RQLGDLSSGP NPGGVSGNAV FNNVEASVRY QFMTSLFGGV AYDYTHGGGV NGRDGATYHQ VAAGLDYFLS KRTDVYVSAV YQRASGTDST GHVAVAAING PGASANDRQL QARVGMRHKF
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