Gene BamMC406_2566 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_2566 
Symbol 
ID6179007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp2848805 
End bp2850583 
Gene Length1779 bp 
Protein Length592 aa 
Translation table11 
GC content69% 
IMG OID641682341 
ProductO-antigen polymerase 
Protein accessionYP_001809259 
Protein GI172061607 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3307] Lipid A core - O-antigen ligase and related enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.968292 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTCTA CTTTTTCCCG TTCGTTGCCG CTCGTTGCGC TGGCTGTCGC CCTGATCGTG 
CCGTACGCGA TCACGAATCA CACGTATCCG ATTCCGACCT TCTATTCCGA GTTTGCCGCG
CTGGTGCTGT ATCTGCTGGT GGGGCTCTCC GTCGTCCTGC TCGCGCGCAC GGCGCGCCCG
GCCGAGCCGT TCGCCGCGCC GGCCGCGTTC GTCGCGCCGC TCGGGTTCGC AGCGGTGCTG
CTCGCGCAGG TCGCGCTGAT GCCGCTGAAA GTACCGTCGA TGAACTGGCT GGCGCTCGGC
TATCTGGCCG CCGCGCTGGT CGCGATGCAG GCCGGCTACA CGCTCGCGCG CGAGGGGCTC
GCCGAAGCCA CCGCGCGAAT GATGGCCGGC GCGCTGCTCG TCGGCGGCGT GTTCGCGGTC
GCGAGCCAGG TCGTGCAGTT GTTCCATCTC GAAACCGCGG TGTCGCCGTT CGTCGTGGTC
TATAACATCG CGGTCGATCG CCGTCCGTAC GGCAACATGG CGCAGGCGAA CCACCTGGCG
ACCTACATCG CGTTTGCGCT CGCGGGCGCG CTGTATCTGG TGCAGACGCG CCGGCTCGCG
GTATGGGCCT GGTTCGCGCT GTCGATCGTG CTGTCGGGCG GTCTCGCGCT GACGGTGTCG
CGCGGCCCGT GGCTGCAGGT CGCGGTGATG GTCGTCGCGG GCTTCTGGAT GGCATGGCTC
GAGTCGCGCC GTGCGCCCGG CAACCGCCGC GCCTGGCTGA TACCGGCCGC GCTCGCGGTG
GCCTTCGTCG CGGTGAACGT CGCGGTGCGC TGGGCCAACG TGCACTTCCA CCTGGGGCTT
GCCGAGTCGG CCGCCGAACG GATGCGCGAC GCGGGGCAGA TCGCGCCGCG GCTCGCGCTG
TGGAAGTACG GGCTTGCGAT GTTCCGCGAG CATCCGGTGC TGGGCGTCGG CTGGGGCGAA
TTCCCGTCGC ACCAGTTCGC GCTCGTGCGC ACGCTCGGCG GTGTCGAGAT CGCGAACAAC
TCGCACGACA TTTTCATCGA CCTGCTCGCG AAGTCCGGTC TGCTGGGTCT CGGCGTGCTC
GTCGTCGCGC TCGTGACGTG GTTCGTGCGC GCGGTGCGTG CGCCGCAGTC GAGCACGCGC
GTGTTCGGCC TCGCGCTGAT CGGCATCCTG CTGATGCATG CGCTCGTCGA ATATCCGCAG
CAGTACATGT TCTTCCTGCT GCCGGCGATG TTCGTGATCG GCCTGCTCGA CGTGAAGCCG
CTGCGCCTCC TGCCGGGCCG CGCGGCGTTC GGGCTGTTCG CGGTGCTGTC GGTCGGCGGC
GTGCTGGCGG CGGTGCCCGT GCTGCGCGAC TACCAGCGCG CGGAAGTGCT GTATTACGGC
AGCGATCCTG CCGCGCAGTA CCGCGATGCG CCGTCGCAGC TGTTCGGCGC ATGGGGCGAT
TACGGAGTGG CCACGCTGCT GACGATTTCG CCGGAGAATC TGCCGCTCAA GCTCGCCGCG
CACGAGCGCG CGATCGCGCT GCTGCCGGGC GAGACGGTGC TGCGCCGCTA TGCGGCGCTG
CAGGCGCTGG CCGGTCGGGA GGCCGATGCG CTCGACACGG TTGCGCGCCT GCATGTGTTC
GCGAAGGAAT TGAAGGACTG GCCGCAGCAA TTGGCGTTGC TGTACAAGCT GTGCGACCAG
CAACCGGCGC TGAAGGCGTT CAAGGCGGCC GTCGTCGCGA AGTACGGGGA AGTGCCGGCC
GATGCGGACG AGGACGACTC CGACGACGAT TCCGAGTGA
 
Protein sequence
MPSTFSRSLP LVALAVALIV PYAITNHTYP IPTFYSEFAA LVLYLLVGLS VVLLARTARP 
AEPFAAPAAF VAPLGFAAVL LAQVALMPLK VPSMNWLALG YLAAALVAMQ AGYTLAREGL
AEATARMMAG ALLVGGVFAV ASQVVQLFHL ETAVSPFVVV YNIAVDRRPY GNMAQANHLA
TYIAFALAGA LYLVQTRRLA VWAWFALSIV LSGGLALTVS RGPWLQVAVM VVAGFWMAWL
ESRRAPGNRR AWLIPAALAV AFVAVNVAVR WANVHFHLGL AESAAERMRD AGQIAPRLAL
WKYGLAMFRE HPVLGVGWGE FPSHQFALVR TLGGVEIANN SHDIFIDLLA KSGLLGLGVL
VVALVTWFVR AVRAPQSSTR VFGLALIGIL LMHALVEYPQ QYMFFLLPAM FVIGLLDVKP
LRLLPGRAAF GLFAVLSVGG VLAAVPVLRD YQRAEVLYYG SDPAAQYRDA PSQLFGAWGD
YGVATLLTIS PENLPLKLAA HERAIALLPG ETVLRRYAAL QALAGREADA LDTVARLHVF
AKELKDWPQQ LALLYKLCDQ QPALKAFKAA VVAKYGEVPA DADEDDSDDD SE