| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2539 |
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| Symbol | |
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| ID | 6178562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 2819547 |
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| End bp | 2821169 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641682314 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_001809232 |
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| Protein GI | 172061580 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0749722 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.543393 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCACTT GTCTCTACAA TGTGCGCTCC GGCGCGCCGC GCGCCCTGCC CGAACCCCTG
CATTTCCCGT ATTCGCCCAT GCCGATTTCC GATCTCTCCG CCCGGTTCGC ACCCCGCGCC
CGCGTCTGCG CCCGCGTCTG CCTGCGTGCG GCCGCCGTCG TCGCCACCTG CACGGCCCTT
GCATTCGCAC CTCCCGCGCA GGCCCGCAAG AAGCTTCACA AGGAAGCGCG CAAGACCGCC
GTCGTGTCGC CCGCCGCGCG CGCGGCCGGC CTGCCGGCGT CCGTGCTCGT CGCGCTGCAG
CGCGCGAAGG TACCTGCATC GGCGATGAGC GTCGTCGTCG AGCGCGTCGG CGATCCGGAG
CCGCTGATCG AATGGAACGC GAACCGGCCG ATGCTGCCGG CGTCGACGAT GAAGCTCGTC
ACGACCTTCT CGGGCCTGTC GATCCTCGGC CCCGACTTCC GCTGGCGCAC CACCGCGTAT
GCGGACGGCC CGGTCGATCC GGACGGCACG CTGCAAGGCA ACCTGTACAT CAAGGGCACC
GGCGATCCGA AGCTCGTGCC CGAGGAGTTG ATCGACCTCG TCGACAAGCT TCGCAAGGCG
GGCGTCAAGC GCGTGGCCGG CGGCCTCGTG CTCGACAAGA GCTATTTCGC CGCGTCGACG
CGCGACCTGC CGTCGTTCGA CGACGACGTG AGCGCACCGT ACAACGTCGG CCCCGACCCG
CTGCTGTACG CATTCAAGGC CGTGTCGTTT ACGGTGACAC CGGGCGACGA CGGCAAGATC
GCCGTCGATG TGCTGCCGCC GCTCGCCAAT CTGTCGATCG ACAACCAGCT GTACGAAGGC
AGTGGATCGT GCGGCGCGGC GGCCGCGGCC GCGCGTCCGA CGCTGACGGC CGGCAGCGGG
ATCATGACCG CGTCGTTCGC CGGCGACTAT CCGCTGCGCT GCGGCGCGCG CACGACCAAT
CTCGCGATCC TCGATCACAC GACGTTCTTC GCGCGCGGCT TCCTCGCGCT GTGGCAGCAG
GACGGCGGCA CGATCGCGGG CCCGGTCAGC GAAGGCAAGG TGCCGACCAC CGCGCGCCCG
CTCGCCGTCC ATCACAGCCC GGTACTCGGC AGCATCGTCT ACGACATCAA CAAGTTCAGC
AACAACGTGA TGGCGCGCAA CCTGTTCCTG ACGATCGGCG CGGTCGCCGG CAAGCCGCCC
GCGACACCCG AGCAGTCGAG CCGCGCGATT CAGGCATTCC TGCGCAAGAA CGGGATCGCG
ATGCCCGACC TCGCGCTCGA GAACGGCTCG GGCCTGTCGC GCGACGAGCA CGTGAGCGCG
CTGTCGCTCG CCGCGCTGCT GCAGGCCGCG AACGCGAGCC CGATCGCGCA GGCGTTCGTC
GATTCGCTGC CGGTCGCCGG CATCGACGGC ACGATGAAGA ACCGCCTGAC CAACGCCGGC
GTGCTCGGCA ACGCGCACAT CAAGACGGGC ACGCTGCGCG ACGTGCGCGC GATCGCGGGC
TACGTCGCGG GCGCGGACGG CCAGAGCTAC GTCGTCGTCA GTTTCATCAA CGACGATCAC
GCGGAAGCCG CGCGCGCCGC GCACGACACG CTGCTCGAGT GGATCTACGC GGGCGCGCAC
TGA
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| Protein sequence | MRTCLYNVRS GAPRALPEPL HFPYSPMPIS DLSARFAPRA RVCARVCLRA AAVVATCTAL
AFAPPAQARK KLHKEARKTA VVSPAARAAG LPASVLVALQ RAKVPASAMS VVVERVGDPE
PLIEWNANRP MLPASTMKLV TTFSGLSILG PDFRWRTTAY ADGPVDPDGT LQGNLYIKGT
GDPKLVPEEL IDLVDKLRKA GVKRVAGGLV LDKSYFAAST RDLPSFDDDV SAPYNVGPDP
LLYAFKAVSF TVTPGDDGKI AVDVLPPLAN LSIDNQLYEG SGSCGAAAAA ARPTLTAGSG
IMTASFAGDY PLRCGARTTN LAILDHTTFF ARGFLALWQQ DGGTIAGPVS EGKVPTTARP
LAVHHSPVLG SIVYDINKFS NNVMARNLFL TIGAVAGKPP ATPEQSSRAI QAFLRKNGIA
MPDLALENGS GLSRDEHVSA LSLAALLQAA NASPIAQAFV DSLPVAGIDG TMKNRLTNAG
VLGNAHIKTG TLRDVRAIAG YVAGADGQSY VVVSFINDDH AEAARAAHDT LLEWIYAGAH
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