Gene BamMC406_2536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_2536 
Symbol 
ID6178778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp2815812 
End bp2817296 
Gene Length1485 bp 
Protein Length494 aa 
Translation table11 
GC content68% 
IMG OID641682311 
Productprotease Do 
Protein accessionYP_001809229 
Protein GI172061577 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.483569 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.898326 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACACTC GATTCCTTGC GCGCGGCGCC GTCGCGGTCG CCGTGGCGGC CGCCCTGTCC 
GCCGGCTATG TCGCGGGCAC CCGCCACGCC GATCCGCAGA TCATCACGCC TGCGCAGGCC
GCTGCGCTGA TGCCGGCCGA GGCCGCGGCG AAGACGGGCA TTCCCGATTT CTCCGGGCTC
GTCGAAACCT ACGGCCCGGC GGTCGTGAAC ATCAGCGCGA AGCACGTCGT GAAGCAGGTG
TCGCGACGCG TGCAGCAGCC GCAACTGCCG ATGGATCCGA GCGATCCGTT CTACCAGTTC
TTCAAGCACT TCTACGGCCA GGTGCCGGGC ATGGGCGGCG ACGCGCAGCC GGACGACCAG
CCGAGCGCGA GCCTCGGTTC GGGCTTCATC GTCAGCGCCG ACGGGTACAT CCTCACGAAC
GCGCACGTGA TCGACGGCGC GAACGTCGTC ACGGTCAAGC TGACCGACAA GCGCGAGTAC
AAGGCGAAGG TCGTCGGCTC CGACAAGCAG TCCGATGTCG CGGTGCTGAA GATCGACGCG
AGCGGCCTGC CGACCGTGAA GATCGGAGAC CCGGGCCAGA GCAAGGTCGG CCAGTGGGTC
GTCGCGATCG GCTCGCCGTA CGGTTTCGAC AACACGGTCA CGTCCGGCAT CATCAGCGCG
AAATCGCGCG CGCTGCCCGA CGAGAACTAC ACGCCGTTCA TCCAGACCGA CGTGCCGGTG
AACCCCGGCA ACTCGGGCGG CCCGCTGTTC AACCTGCAGG GTGAGGTGAT CGGCATCAAC
TCGATGATCT ACTCGCAGAC GGGCGGCTTC CAGGGCCTGT CGTTCGCGAT CCCGATCAAT
GAGGCGATCA AGGTCAAGGA CGAGCTCGTG AAGACGGGCC ACGTGAGCCG CGGCCGCCTC
GGCGTCGCGG TGCAGGGGCT GAACCAGACG CTCGCGAGCT CGTTCGGACT GCAAAAGCCG
GATGGCGCGC TCGTCAGCTC GGTCGACCCG AACGGCCCGG CCGCGAAGGC CGGCCTGCAG
CCGGGCGACG TGATCCTGGG GGTGAACGGC TCGCCGGTGG CCGACTCCAC GTCGCTGCCC
GCGCAGATCG CGAACCTGAA GCCGGGCTCG AAGGCCGATC TGCAGGTGTG GCGCGACAAG
TCGAAGAAGA CGATCAGCGT GACGCTCGGC GCGATGACCG ACGCGAAGCT GGCGTCGAAC
GACGGCGGCC CGGTCGAGCA GGGGCGCCTC GGCGTCGCGG TGCGGCCGCT CACGCCGCAG
GAGCGCAGCG CCACCAACCT GTCGCACGGG CTGATCGTGC AGCAGGCCGG CGGCCCGGCC
GCGACCGCGG GCATCCAGCC CGGCGACGTG ATCCTCGCGG TCAACGGCCG CCCGGTCACG
AACGCCGAGC AATTGCGCGA CGCGGTCAAG GGAGCGGGCA ACAGTCTTGC TCTCCTGATT
CAGCGCGATA ATGCACAGAT CTTCGTGCCG GTCGACCTGA GCTGA
 
Protein sequence
MNTRFLARGA VAVAVAAALS AGYVAGTRHA DPQIITPAQA AALMPAEAAA KTGIPDFSGL 
VETYGPAVVN ISAKHVVKQV SRRVQQPQLP MDPSDPFYQF FKHFYGQVPG MGGDAQPDDQ
PSASLGSGFI VSADGYILTN AHVIDGANVV TVKLTDKREY KAKVVGSDKQ SDVAVLKIDA
SGLPTVKIGD PGQSKVGQWV VAIGSPYGFD NTVTSGIISA KSRALPDENY TPFIQTDVPV
NPGNSGGPLF NLQGEVIGIN SMIYSQTGGF QGLSFAIPIN EAIKVKDELV KTGHVSRGRL
GVAVQGLNQT LASSFGLQKP DGALVSSVDP NGPAAKAGLQ PGDVILGVNG SPVADSTSLP
AQIANLKPGS KADLQVWRDK SKKTISVTLG AMTDAKLASN DGGPVEQGRL GVAVRPLTPQ
ERSATNLSHG LIVQQAGGPA ATAGIQPGDV ILAVNGRPVT NAEQLRDAVK GAGNSLALLI
QRDNAQIFVP VDLS