| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2527 |
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| Symbol | |
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| ID | 6178552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 2804984 |
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| End bp | 2806507 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641682302 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001809220 |
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| Protein GI | 172061568 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.10146 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCAAA AACACGCTTT GACTGCAATC GCGGTCGCGC TCCTTGCCAC GGGCTGCACG
ATGGCGCCGC ATTACAAGCG GCCCGACGCA CCCGTCGCGC AGGCGTACCC GGCCGACGGC
GTCTATGCGA CGCAGCCGGG TGCTGCCGGC GCGCGCAGCG CGAACGGCCA GGCGGCGACC
GCCATCGGCT GGCGCGAATT CTTCGTCGAT CCGCGCCTCC AGCGGCTGAT CGAGATCGCG
CTGAAGAACA ACCGCGACCT GCGCGTCGCG GTGCTGAACA TCGAGGCGGC GCGCGCGCAG
TACCAGATCA CGCGCGCCGG CCTGTTCCCG ACGCTCGACG GCACGGGCAC CGGCAGTATC
CAGCGCGTGC CGCAGGGCCT TTCGCAGACC GGTGCGCCGT ACATCTCGCG CGCCTACAAC
GTCGGCCTGT CCGCGTCGTG GGAGCTCGAC CTGTTCGGCC GCGTGCAGAG CCTGAAGGAC
CAGGCGCTCG CGCAGTACCT GTCGACGTCG TATGCACGGC AGGCCACCGA GATCTCGCTG
GTGTCGCAGG TCGCGGATCA GTACCTGACG CTGCTGTCGA CCGACGACCT GCTGAAGGTC
ACGGAAAACA CGCTGAAGAC CGCGCAGGCG TCGTACGACC TGACCAAGCT GCAGTTCGAC
AACGGCACGG GCTCCGAGCT CGAGCTGCGT CAGGCGCAGA CGGTGGTCGA GCAGGCGCTG
TCGAACCAGC AGGCGCAGGC GCGCGCGCGT GCGCAGGCAT TGAATGCGCT GGTGCTGCTG
ATCGGCGAGC CGCTCCCCGA CGATCTGCCC GCGGGCATGC CGCTCGACGC GCAGAACCTG
CTGACGGACG TGCCGGCCGG CCTGCCGTCG GACCTGCTGA CGCGTCGCCC CGACGTGATG
CAGGCCGAGC AGACGCTGCT GGCCGCGAAC GCGAACATCG GCGCGGCACG CGCGGCGTTC
TTCCCGCGTA TCTCGCTGAC GGGCGCGTTC GGCACCGGCA GCCCGACGCT CGGCGGGCTG
TTCAAGGCCG GGACGGCCGC ATGGTCGTTC GCGCCGCAGA TCACGATGCC GATCTTCGAG
GGCGGGCAGA ACATCGCGAA CCTGAACCTC GCGAACGTGC AGAAGCGCAT CGAGATCGCC
AACTACGAGA AGGCGATCCA GTCGGCGTTC CGCGAAGTGT CGGACGGGCT GGCGGCACGC
GGCACGTACG ACCAGCAGAT CGCCGCGCTC CAGCGCAACG AGCACGCGCA GCAGCGTCGT
TTCGATCTGT CGGACCTGCG CTACAAGAAC GGGGTCGACA GCTACCTGTC GGTGCTGACC
GCGCAAACCG ATCTGTACAC CGCGCAGCAG TCGCTGATCA ACGCGCGTCT GGCCCGCTGG
ACGAACCTGG TCGACCTGTA CCGCGCACTG GGCGGCGGGT GGATCCAGCA AGCCGGCGAG
ACGCCGCGCG CGCCGGACCA GACGGTCGAC TACGACAAGG CGGCCGCACC GGCGCCTGCG
TCGGCGGCCG CGACGAACGG GTAA
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| Protein sequence | MMQKHALTAI AVALLATGCT MAPHYKRPDA PVAQAYPADG VYATQPGAAG ARSANGQAAT
AIGWREFFVD PRLQRLIEIA LKNNRDLRVA VLNIEAARAQ YQITRAGLFP TLDGTGTGSI
QRVPQGLSQT GAPYISRAYN VGLSASWELD LFGRVQSLKD QALAQYLSTS YARQATEISL
VSQVADQYLT LLSTDDLLKV TENTLKTAQA SYDLTKLQFD NGTGSELELR QAQTVVEQAL
SNQQAQARAR AQALNALVLL IGEPLPDDLP AGMPLDAQNL LTDVPAGLPS DLLTRRPDVM
QAEQTLLAAN ANIGAARAAF FPRISLTGAF GTGSPTLGGL FKAGTAAWSF APQITMPIFE
GGQNIANLNL ANVQKRIEIA NYEKAIQSAF REVSDGLAAR GTYDQQIAAL QRNEHAQQRR
FDLSDLRYKN GVDSYLSVLT AQTDLYTAQQ SLINARLARW TNLVDLYRAL GGGWIQQAGE
TPRAPDQTVD YDKAAAPAPA SAAATNG
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