Gene BamMC406_2482 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_2482 
Symbol 
ID6177619 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp2756852 
End bp2758399 
Gene Length1548 bp 
Protein Length515 aa 
Translation table11 
GC content69% 
IMG OID641682258 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_001809176 
Protein GI172061524 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0672514 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCGAA AGATGTTGAT CAAACCGTTC CGCTCGATCG AATCGGCGGC CACCGCGACG 
CACAACTGGC GGCGCCGCCA GATCCTGCGC GCGGGCGCGT CGACGCTGGT GCTCGGGCTC
GCCGCACCGC GGCTCGCGCA CGCGTCGTCG GTGCTCGGCG TGCGCGTGTG GCCCGCGCGC
GATTACACGC GCGTCACGAT CGAATCGGAC CAGCCGCTGC AGAATAGCCA ACAGCTGTTG
CAGGGCCCCG ACCGGCTCGT CGTCGACCTG AGCGGGCTCG ATCTCGATCA GGCCCTGCGC
GACCTCGTGT CGAAGATCGC GCCGAACGAT CCGCAGATCC AGTCGGTGCG CGTCGGTCAG
TACCAGCCGC ACGTCGTGCG GATGGTGTTC GACCTGAAAG GCTCGGTGAA GCCGCAGGTG
TTCACGCTGC CGCCGGTGGG CACCTACAAG TACCGGCTCG TGTTCGACCT GTATCCGGCC
GTCGCGCCCG ATCCGCTGTC CGACCTGATC GCGCAGACGG AACGCAAGGA ACAGGCGCTC
AACGACACCG CGCGCGCGCA GCAGATGCAG CCGCCGACCT CGCTCGCGGG CCCGGCCGCG
CCGTCGGCGC CCGCCGCGGG CGACAGCACC GACGCGTTCT TCCAGCGCTT CGCGCAGAAC
ACGCCGGCCA CGCCGGCCAC GCCGGCCACG CCGCGCACGC CGCCGGCCGC CGCGACGCCC
TCCACGCCCG CGAAACCGGC CGTCAAGCCG CCGCCCGTCA TCGCGCGCCG CGACGACAGC
GACGACGACG GCGACACCTA CAAGTTCACC GCACCCAAAT CCGGCAAGGG CGGCACCATG
CGCCTGCTGA CGGTCGCGAT CGATCCGGGC CACGGCGGCG AGGATCCGGG CGCGATCGGC
GGCGGCGGCA CGTACGAGAA GCACATCGCG CTCGACATCG CGAAGAAGCT GCGCGCGAAG
ATCGACGGCG CGCCGAACAT GCGCGCGATG ATGACGCGCG ACGCCGACTT CTTCGTGCCG
CTGAACGTGC GCGTGCAGAA GGCGCGCCGC GTCGGCGCCG ACCTGTTCGT GTCGATCCAC
GCGGATGCGT TCACGACGCC CTCCGCGCGC GGCTCGTCGG TGTTCGCGCT GTCCGACCAC
GGCGCGACGA GCGCCGCGGC ACGCTGGATG GCGAACAAGG AAAACTCGTC GGACCTGATC
GGCGGCATCA ACATCAAGAC GCAGGACGCG GCCGTGAGCC GCGCGCTGTT CGACATGTCG
ACGACCGCGC AGATCCGCGA TTCGCTGCGC TACGGCGGCT ACGTGCTGAA GGAAGTCGGC
GGCATCAACA AGCTGCACAA GGGCTCGGTC GAGCAGGCCG GATTCGCGGT GCTGAAGGCG
CCCGACATTC CGTCGATCCT CGTCGAGACC GCGTTCATCA GCAACCCGGA AGAAGAGAGC
CGGCTGAACG ACGACAGCTA TCGCGACCAG ATGGCCGACG CGATCTTCCG CGGCATCAAG
CGTTACTTCG CCGCGAACCC GCCGCTCGCG AAGAACCGGA TGGCCTGA
 
Protein sequence
MSRKMLIKPF RSIESAATAT HNWRRRQILR AGASTLVLGL AAPRLAHASS VLGVRVWPAR 
DYTRVTIESD QPLQNSQQLL QGPDRLVVDL SGLDLDQALR DLVSKIAPND PQIQSVRVGQ
YQPHVVRMVF DLKGSVKPQV FTLPPVGTYK YRLVFDLYPA VAPDPLSDLI AQTERKEQAL
NDTARAQQMQ PPTSLAGPAA PSAPAAGDST DAFFQRFAQN TPATPATPAT PRTPPAAATP
STPAKPAVKP PPVIARRDDS DDDGDTYKFT APKSGKGGTM RLLTVAIDPG HGGEDPGAIG
GGGTYEKHIA LDIAKKLRAK IDGAPNMRAM MTRDADFFVP LNVRVQKARR VGADLFVSIH
ADAFTTPSAR GSSVFALSDH GATSAAARWM ANKENSSDLI GGINIKTQDA AVSRALFDMS
TTAQIRDSLR YGGYVLKEVG GINKLHKGSV EQAGFAVLKA PDIPSILVET AFISNPEEES
RLNDDSYRDQ MADAIFRGIK RYFAANPPLA KNRMA