Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_2454 |
Symbol | |
ID | 6178292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 2729620 |
End bp | 2731056 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641682230 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001809148 |
Protein GI | 172061496 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000627963 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTCCAAC TCCCGCCCGC CGCCGCTTCC GGCGAAAAGA ACCTCACCGT GATGCTGTGG CTCGTCGCGA CGGGCTTCTT CATGCAGACG CTCGATGCGA CGATCGTCAA CACGGCGCTG CCGTCGATGG CCGTGAGTCT CGGCGAATCT CCGCTACGGA TGCAGTCGGT CGTGATCGCG TACTCGCTGA CGATGGCGGT GATGATTCCG GTGTCGGGCT GGCTCGCGGA TACATTCGGC ACGCGGCGCG TGTTCTTCAG CGCGATCCTG GTGTTCTCGC TCGGCTCGCT GCTTTGCGCG AACGCGCATA CGCTGCAGCA GCTCGTCGTG TTCCGCGTCG TGCAGGGGGT GGGCGGCGCG ATGCTGCTGC CGGTCGGGCG GCTCGCCGTG CTGCGCACGT TCCCGGCCGA ACGCTACCTG AGCGCGCTGT CGTTCGTCGC GATTCCCGGG CTGATCGGTC CGCTGATCGG GCCGACGCTC GGCGGCTGGC TCGTGAAGAT CGCGTCGTGG CACTGGATCT TCCTGATCAA CGTGCCGGTC GGCGTCACCG GCTGCATCGC GACCTTCTAC TCGATGCCCG ACTCGCGCAA CCCGGCCGTC GGCCGCTTCG ACCTGAAGGG CTATCTGCTG CTCACGATCG GGATGGTCGC GATCTCGCTG TCGCTCGACG GGCTCGCCGA TCTCGGCATG CAGCACGCGG CCGTGCTGGT GCTGCTGATC CTGAGCCTCG CGTGCTTCGT CGCGTACGGA CTGTACGCGG TGCGCGCGCC GCAGCCGATC TTCTCGCTCG AACTGTTCAA GATCCATACG TTCAGCGTCG GCCTGCTCGG CAACCTGTTC GCGCGGATCG GCAGCGGCGC GATGCCGTAC CTGATCCCGC TGCTGCTGCA GGTGAGCCTC GGCTATTCGG CGTTCGAGGC CGGGCTGATG ATGCTGCCGG TCGCGGCGGC GGGAATGTTC TCGAAGCGGA TCATCACGCA GCTGATCACG CGGCACGGCT ACCGCAAGGT GCTGCTCGTG AACACGATCA TGGTGGGCGT GATGATGGCG AGCTTCGCGC TGATGCGCGA CACGGTGCCT GTCTGGGTGA AGGTCGTGCA CCTCGCGCTG TTCGGCGGCT TCAACTCGAT GCAGTTCACC GCGATGAACA CGCTGACGCT GAAGGATCTC GGCACCGGCG GCGCGAGCAG CGGCAACAGC CTGTTCTCGC TCGTGCAGAT GCTGTCGATG AGCCTCGGCG TCACCGTCGC CGGTGCGCTG CTCGCGACCT TCACCGGGAT GCTGCGCACA GTGACGCCGA GCAATACGCT GCCCGCGTTC CATGCGACCT TCATCTGCGT CGGGATCATC ACGGCCGCGT CGGCATGGAT CTTCGCGCAG CTCGCACCCG AAATCCGCGG CCGCGCGCAG AAGACCGACC CGTCCGAACG CGCGTGA
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Protein sequence | MFQLPPAAAS GEKNLTVMLW LVATGFFMQT LDATIVNTAL PSMAVSLGES PLRMQSVVIA YSLTMAVMIP VSGWLADTFG TRRVFFSAIL VFSLGSLLCA NAHTLQQLVV FRVVQGVGGA MLLPVGRLAV LRTFPAERYL SALSFVAIPG LIGPLIGPTL GGWLVKIASW HWIFLINVPV GVTGCIATFY SMPDSRNPAV GRFDLKGYLL LTIGMVAISL SLDGLADLGM QHAAVLVLLI LSLACFVAYG LYAVRAPQPI FSLELFKIHT FSVGLLGNLF ARIGSGAMPY LIPLLLQVSL GYSAFEAGLM MLPVAAAGMF SKRIITQLIT RHGYRKVLLV NTIMVGVMMA SFALMRDTVP VWVKVVHLAL FGGFNSMQFT AMNTLTLKDL GTGGASSGNS LFSLVQMLSM SLGVTVAGAL LATFTGMLRT VTPSNTLPAF HATFICVGII TAASAWIFAQ LAPEIRGRAQ KTDPSERA
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