Gene BamMC406_2454 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_2454 
Symbol 
ID6178292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp2729620 
End bp2731056 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content66% 
IMG OID641682230 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_001809148 
Protein GI172061496 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000627963 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTCCAAC TCCCGCCCGC CGCCGCTTCC GGCGAAAAGA ACCTCACCGT GATGCTGTGG 
CTCGTCGCGA CGGGCTTCTT CATGCAGACG CTCGATGCGA CGATCGTCAA CACGGCGCTG
CCGTCGATGG CCGTGAGTCT CGGCGAATCT CCGCTACGGA TGCAGTCGGT CGTGATCGCG
TACTCGCTGA CGATGGCGGT GATGATTCCG GTGTCGGGCT GGCTCGCGGA TACATTCGGC
ACGCGGCGCG TGTTCTTCAG CGCGATCCTG GTGTTCTCGC TCGGCTCGCT GCTTTGCGCG
AACGCGCATA CGCTGCAGCA GCTCGTCGTG TTCCGCGTCG TGCAGGGGGT GGGCGGCGCG
ATGCTGCTGC CGGTCGGGCG GCTCGCCGTG CTGCGCACGT TCCCGGCCGA ACGCTACCTG
AGCGCGCTGT CGTTCGTCGC GATTCCCGGG CTGATCGGTC CGCTGATCGG GCCGACGCTC
GGCGGCTGGC TCGTGAAGAT CGCGTCGTGG CACTGGATCT TCCTGATCAA CGTGCCGGTC
GGCGTCACCG GCTGCATCGC GACCTTCTAC TCGATGCCCG ACTCGCGCAA CCCGGCCGTC
GGCCGCTTCG ACCTGAAGGG CTATCTGCTG CTCACGATCG GGATGGTCGC GATCTCGCTG
TCGCTCGACG GGCTCGCCGA TCTCGGCATG CAGCACGCGG CCGTGCTGGT GCTGCTGATC
CTGAGCCTCG CGTGCTTCGT CGCGTACGGA CTGTACGCGG TGCGCGCGCC GCAGCCGATC
TTCTCGCTCG AACTGTTCAA GATCCATACG TTCAGCGTCG GCCTGCTCGG CAACCTGTTC
GCGCGGATCG GCAGCGGCGC GATGCCGTAC CTGATCCCGC TGCTGCTGCA GGTGAGCCTC
GGCTATTCGG CGTTCGAGGC CGGGCTGATG ATGCTGCCGG TCGCGGCGGC GGGAATGTTC
TCGAAGCGGA TCATCACGCA GCTGATCACG CGGCACGGCT ACCGCAAGGT GCTGCTCGTG
AACACGATCA TGGTGGGCGT GATGATGGCG AGCTTCGCGC TGATGCGCGA CACGGTGCCT
GTCTGGGTGA AGGTCGTGCA CCTCGCGCTG TTCGGCGGCT TCAACTCGAT GCAGTTCACC
GCGATGAACA CGCTGACGCT GAAGGATCTC GGCACCGGCG GCGCGAGCAG CGGCAACAGC
CTGTTCTCGC TCGTGCAGAT GCTGTCGATG AGCCTCGGCG TCACCGTCGC CGGTGCGCTG
CTCGCGACCT TCACCGGGAT GCTGCGCACA GTGACGCCGA GCAATACGCT GCCCGCGTTC
CATGCGACCT TCATCTGCGT CGGGATCATC ACGGCCGCGT CGGCATGGAT CTTCGCGCAG
CTCGCACCCG AAATCCGCGG CCGCGCGCAG AAGACCGACC CGTCCGAACG CGCGTGA
 
Protein sequence
MFQLPPAAAS GEKNLTVMLW LVATGFFMQT LDATIVNTAL PSMAVSLGES PLRMQSVVIA 
YSLTMAVMIP VSGWLADTFG TRRVFFSAIL VFSLGSLLCA NAHTLQQLVV FRVVQGVGGA
MLLPVGRLAV LRTFPAERYL SALSFVAIPG LIGPLIGPTL GGWLVKIASW HWIFLINVPV
GVTGCIATFY SMPDSRNPAV GRFDLKGYLL LTIGMVAISL SLDGLADLGM QHAAVLVLLI
LSLACFVAYG LYAVRAPQPI FSLELFKIHT FSVGLLGNLF ARIGSGAMPY LIPLLLQVSL
GYSAFEAGLM MLPVAAAGMF SKRIITQLIT RHGYRKVLLV NTIMVGVMMA SFALMRDTVP
VWVKVVHLAL FGGFNSMQFT AMNTLTLKDL GTGGASSGNS LFSLVQMLSM SLGVTVAGAL
LATFTGMLRT VTPSNTLPAF HATFICVGII TAASAWIFAQ LAPEIRGRAQ KTDPSERA