| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2444 |
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| Symbol | |
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| ID | 6178151 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 2717732 |
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| End bp | 2718310 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641682220 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001809138 |
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| Protein GI | 172061486 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000000696433 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCCTGA TCGCCCTCAA CAAGCCGTTC GGCACGATTT GCCAGTTTTC CGCGCACGAG
ACGCGGCCGT CGCTCGGCGA CTGGGTAAAA ACGCCCGGCG TTTACCCGGC CGGCCGGCTG
GACGCGGACA GTGAGGGCCT GCTGCTGCTC ACCGACGACG GCGCGCTGCA GGCGCGCATC
GCGGAGCCGC GCCACAAGCT CGTCAAGCGC TACTGGGCGC AGGTCGACGG CGCGCCGGGC
CCGGCCGACC TGAAGGCGCT CGCGCGCGGC GTCGATCTCG GCGACTGCGT GACGCGCCCG
TGCCGCGCCG AATTCATCGA GCCGCCCGAC GCGCTGTGGC CGCGCAACCC GCCGATCCGC
TACCGCGCCG CGATTCCGAC CACGTGGATC GAACTGGCGA TCACCGAAGG CAAGAATCGG
CAGGTGCGCC GGATGACGGC CGCGATCGGC TTCCCGACGT TGCGTCTCGT GCGCGTGGGC
ATCGGCGCGC TGGACATATT CGCGCTCGGC ATTGCGCCGG GCGAAACAAT CGCGCTGCCG
CCACGCGCCC CGTGGGACGG TTTTGCCCGC GACGCATGA
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| Protein sequence | MTLIALNKPF GTICQFSAHE TRPSLGDWVK TPGVYPAGRL DADSEGLLLL TDDGALQARI
AEPRHKLVKR YWAQVDGAPG PADLKALARG VDLGDCVTRP CRAEFIEPPD ALWPRNPPIR
YRAAIPTTWI ELAITEGKNR QVRRMTAAIG FPTLRLVRVG IGALDIFALG IAPGETIALP
PRAPWDGFAR DA
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