Gene BamMC406_2405 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_2405 
Symbol 
ID6176993 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp2672982 
End bp2673698 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content70% 
IMG OID641682181 
Productpseudouridine synthase 
Protein accessionYP_001809099 
Protein GI172061447 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.533648 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.354425 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTCG AAAGCATTCT CTACACGCAG GGCTTCGGCT CGCGCCGCCA GTGCCGCGGC 
CTGATCGAAA CGGGTCGCGT CAGCGTCGCG GGCGCGAGCG CGACCGACCC CGACGCGTCG
TTCGACACCG ACGGCCTCGT ATTCACGGTC GACGACACCG CATGGCCGTT CCACGCCCGC
GCGTATCTCG CGCTCAACAA GCCGGCCGGC TACGAGTGTT CGCGGGACCC GCAACACCAC
GCGAGCGTGT TCAGCCTGCT GCCCGCGCCG CTCGTCGCCC GCGGCGTGCA GTGCGTCGGC
CGCCTGGACC AGGACACGAC GGGCCTGCTG CTGCTGTCCG ACGACGGCCA GTTCGTGCAC
GCATACACGT CGCCCAAGCG CAAGGTGCCG AAGACCTACG TCGCGACCGT GCGCCACCCG
CTCGACGACA CCCAGCTGAA CGCGCTGCGC GCCGGCGTGC AGCTCCACGG CGAGCCGAAG
CCGATCGCGG CGGTCGCCGC CCACGCGCGC GACACGCACG CGCTGGCGCT GACCGTCCTC
GAAGGCAAAT ATCATCAGGT GAAACGCATG GTCGCCGCGG CCAGCAACCG CGTCGAGGCG
CTGCACCGCG AAAGCATCGG CGGCTTCACG CTGCCGGTGG ATCTCGCGCC CGGCGCGTGG
CGCTGGCTCG GGGAACGCGA CCTGTCAGCG CTGCGCGATC CCGTCAAAAC CCTCTAA
 
Protein sequence
MDLESILYTQ GFGSRRQCRG LIETGRVSVA GASATDPDAS FDTDGLVFTV DDTAWPFHAR 
AYLALNKPAG YECSRDPQHH ASVFSLLPAP LVARGVQCVG RLDQDTTGLL LLSDDGQFVH
AYTSPKRKVP KTYVATVRHP LDDTQLNALR AGVQLHGEPK PIAAVAAHAR DTHALALTVL
EGKYHQVKRM VAAASNRVEA LHRESIGGFT LPVDLAPGAW RWLGERDLSA LRDPVKTL