Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_2405 |
Symbol | |
ID | 6176993 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 2672982 |
End bp | 2673698 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641682181 |
Product | pseudouridine synthase |
Protein accession | YP_001809099 |
Protein GI | 172061447 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.533648 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.354425 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCTCG AAAGCATTCT CTACACGCAG GGCTTCGGCT CGCGCCGCCA GTGCCGCGGC CTGATCGAAA CGGGTCGCGT CAGCGTCGCG GGCGCGAGCG CGACCGACCC CGACGCGTCG TTCGACACCG ACGGCCTCGT ATTCACGGTC GACGACACCG CATGGCCGTT CCACGCCCGC GCGTATCTCG CGCTCAACAA GCCGGCCGGC TACGAGTGTT CGCGGGACCC GCAACACCAC GCGAGCGTGT TCAGCCTGCT GCCCGCGCCG CTCGTCGCCC GCGGCGTGCA GTGCGTCGGC CGCCTGGACC AGGACACGAC GGGCCTGCTG CTGCTGTCCG ACGACGGCCA GTTCGTGCAC GCATACACGT CGCCCAAGCG CAAGGTGCCG AAGACCTACG TCGCGACCGT GCGCCACCCG CTCGACGACA CCCAGCTGAA CGCGCTGCGC GCCGGCGTGC AGCTCCACGG CGAGCCGAAG CCGATCGCGG CGGTCGCCGC CCACGCGCGC GACACGCACG CGCTGGCGCT GACCGTCCTC GAAGGCAAAT ATCATCAGGT GAAACGCATG GTCGCCGCGG CCAGCAACCG CGTCGAGGCG CTGCACCGCG AAAGCATCGG CGGCTTCACG CTGCCGGTGG ATCTCGCGCC CGGCGCGTGG CGCTGGCTCG GGGAACGCGA CCTGTCAGCG CTGCGCGATC CCGTCAAAAC CCTCTAA
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Protein sequence | MDLESILYTQ GFGSRRQCRG LIETGRVSVA GASATDPDAS FDTDGLVFTV DDTAWPFHAR AYLALNKPAG YECSRDPQHH ASVFSLLPAP LVARGVQCVG RLDQDTTGLL LLSDDGQFVH AYTSPKRKVP KTYVATVRHP LDDTQLNALR AGVQLHGEPK PIAAVAAHAR DTHALALTVL EGKYHQVKRM VAAASNRVEA LHRESIGGFT LPVDLAPGAW RWLGERDLSA LRDPVKTL
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