Gene BamMC406_2352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_2352 
Symbol 
ID6178229 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp2621121 
End bp2621957 
Gene Length837 bp 
Protein Length278 aa 
Translation table11 
GC content56% 
IMG OID641682126 
Productintegrase catalytic region 
Protein accessionYP_001809046 
Protein GI172061394 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.311637 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.149217 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCGAGC TAAGGCAGCA ATATCCGCTT GCGGGCTTGT TGAAGGTTGC CGGCTTGGCG 
CGCAGCACGT TCTACTATCA TCAGAAATTG CTCGGAGCAG CCGACAAGTA TGCCGATACA
AGGGCGAGAA TCTGCTCGCT GTTCGAACGG CACAAGGGCC GCTACGGCTA TCGACGCATC
ACGCTCGCTC TACGTAATCT GGGACAGGTG ATTAACCACA AGACTGTGGC GCGTCTGATG
GGCGAGTTGC GGCTGAAGTC TTGTGTGCGC CCGAAGAAAT ACCGCTCCTA CAAAGGTAGC
GTCGGACGTG TTGCACCTCA TGTTTTACAG CGTCGGTTCT ACGCAAAGCG TCCGAACGAG
AAGTGGGTAA CGGATGTCAC GGAATTCAAC GTGGGCGGCC AGAAGCTGTA CCTGTCACCA
GTGCTCGATC TGTACAACGG CGAGATCATT GCTTATGAAA CCGCGAGGCG CCCGGCGTTC
GAGATGGTCA GCGCAATGCT TCGCAAGGCA TTGGCGCGCT TGAAGTCACA CGAGCGGCCT
CTCTTGCATT CGGATCAGGG CTGGCAGTAC CAGATGCCAG CGTATCGCCG CCTACTGCAG
CAACGAGCGC TCACGCAAAG CATGTCGCGT AAAGGGAATT GCCTGGACAA CGCCGCCATG
GAGAGCTTCT TCGGCACGCT GAAATCCGAG TTCTTCCATC TGAATCGGTT CCGCAACCTG
GACGAACTGC AATCCGGCTT GGCAAGCTAC ATCCACTACT ACAATCACGA CCGCATCAAA
CTGAAACTAA AAGGGCTGAG TCCCGTGCAA TACAGAACTC AGCTCTCTCA GCCCTAG
 
Protein sequence
MLELRQQYPL AGLLKVAGLA RSTFYYHQKL LGAADKYADT RARICSLFER HKGRYGYRRI 
TLALRNLGQV INHKTVARLM GELRLKSCVR PKKYRSYKGS VGRVAPHVLQ RRFYAKRPNE
KWVTDVTEFN VGGQKLYLSP VLDLYNGEII AYETARRPAF EMVSAMLRKA LARLKSHERP
LLHSDQGWQY QMPAYRRLLQ QRALTQSMSR KGNCLDNAAM ESFFGTLKSE FFHLNRFRNL
DELQSGLASY IHYYNHDRIK LKLKGLSPVQ YRTQLSQP