| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2345 |
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| Symbol | |
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| ID | 6176661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 2612074 |
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| End bp | 2614353 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641682119 |
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| Product | lysine decarboxylase |
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| Protein accession | YP_001809039 |
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| Protein GI | 172061387 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.964996 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.113282 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTTC GTTTTCCCGT CGTCATCATC GACGAAGATT TCCGCTCCGA GAACATCTCG
GGCTCCGGCA TCCGGGCGTT GGCCGAAGCG ATCGAGAAGG AGGGCGTCGA AGTCCTCGGC
CTCACGAGCT ACGGCGATCT GACGTCGTTC GCGCAGCAGT CGAGCCGCGC GTCGTGCTTC
ATCCTGTCGA TCGACGACGA CGAACTCATG CTCGGCGAAA CGGGCGCGGA TGGCGAGCTC
CCCGAGCTGG CGACCGCGAT CATCGAGCTG CGCGCGTTCG TGACCGAAGT GCGCCGCCGC
AACGCGGACA TCCCGATCTT CCTGTACGGC GAGACGCGCA CGTCGCGCCA TCTGCCGAAC
GACATCCTGC GCGAACTGCA CGGCTTCATC CACATGTTCG AGGACACGCC GGAGTTCGTC
GCGCGCCACA TCATCCGCGA GGCGAAGGTC TATCTCGACT CGCTCGCGCC GCCGTTCTTC
AAGGAGCTGG TCAAGTACGC GGACGAAGGC TCGTACTCGT GGCACTGCCC GGGCCACTCG
GGCGGCGTCG CGTTCCTGAA GAACCCGCTC GGCCAGATGT TCCACCAGTT CTTCGGCGAG
AACATGCTGC GCGCGGACGT CTGCAATGCA GTTGACGAAC TCGGCCAGCT GCTCGACCAC
ACGGGCCCGG TCGCGGCGTC CGAGCGCAAC GCGGCGCGCA TCTTCAGCGC GGACCACCTG
TTCTTCGTGA CCAACGGCAC GTCGACGTCG AACAAGATCG TCTGGCACGC GACGGTCGCG
CCCGGCGACA TCGTGCTGGT CGACCGCAAC TGCCACAAGT CGATCCTGCA CGCGATCACG
ATGACGGGTG CGATTCCGGT GTTCCTCACG CCGACGCGCA ACCACTTCGG CATCATCGGG
CCGATCCCGC GCGACGAATT CAAGCCGGAG AACATCCGCA AGAAGATCGA GGCGAACCCG
TTCGCACGCG AAGCGCTGCG CGAGAACCCG GACCTGAAGC CGCGCATCCT GACGATCACG
CAGAGCACGT ACGACGGCGT CGTCTACAAC GTCGAGATGA TCAAGGACCT GCTCGGCGAC
CTGCTCGACA CGCTGCACTT CGACGAAGCG TGGCTGCCGC ATGCGACCTT CCACGACTTC
TACCGCGACA TGCACGCGAT CGGCGACGGC CGTCCGCGCA CGGGCGCGCT CGTGTTCGCG
ACGCACTCGA CGCACAAGCT CCTCGCGGGC ATCTCGCAGG CGTCGCAGAT CGTCGTGCAG
GATTCCGAGA ACCGCACGTT CGACAAGCAC CGCTTCAACG AGGCGTACCT GATGCACACG
TCGACGAGCC CGCAGTACGC GATCATCGCG TCGTGCGACG TCGCGGCCGC GATGATGGAG
CCGCCGGGTG GCACCGCGCT CGTCGAGGAA TCGATCGCCG AGGCGATCGA CTTCCGCCGC
GCGATGCGCA AGGTCGATGC CGAATACGGC GACGACTGGT TCTTCAGCGT GTGGGGCCCG
GACGACCTGT CGGAAGAAGG CATCGGTTCG CGCGAGGACT GGATGCTGAA GCCGAACGAC
CACTGGCACG GCTTCGGCCC GCTGGCGGAA GGCTTCAACA TGCTCGACCC GATCAAGGCG
ACGATCATCA CGCCGGGGCT CGACGTCGAC GGCGAGTTCG GCGAGACGGG CATTCCGGCC
GCGATCGTCA CGAAGTACCT GGCCGAGCAC GGGATCATCG TCGAGAAGAC CGGCCTGTAC
TCGTTCTTCA TCATGTTCAC GATCGGCATC ACGAAGGGCC GCTGGAACTC GATGGTGACC
GAGCTGCAGC AGTTCAAGGA CGACTACGAC AACAACCAGC CGCTGTGGCG CGTGCTGCCG
GAATTCGTCG CGCAGCATCC GCGCTACGAG CGCGTCGGCC TGCGCGACCT GTGCACGCAG
ATCCACGACG TGTACCGTGC GAACGACATC GCGCGCCTGA CGACGGAGAT GTACCTGTCG
GACATGGAGC CGGCGCTGAA GCCGTCGGAC GCGTTCGCGA AGCTCGCGCA CCGCAAGATC
GACCGCGTGC CGCTCGACGA GCTCGAAGGC CGCGTGACGA GCATCCTGCT GACGCCGTAC
CCGCCGGGCA TTCCGCTGCT GATCCCGGGC GAGCGCTTCA ACAAGACGAT CGTGAACTAC
CTGCGGTTCG CGCGCGACTT CAACGAACGC TTCCCGGGCT TCCACACCGA CATCCACGGC
CTCGTCGCGG AAGAAGTGAA CGGTCGCGTC GAGTACTTCG TCGACTGCGT GCGCGACTGA
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| Protein sequence | MKFRFPVVII DEDFRSENIS GSGIRALAEA IEKEGVEVLG LTSYGDLTSF AQQSSRASCF
ILSIDDDELM LGETGADGEL PELATAIIEL RAFVTEVRRR NADIPIFLYG ETRTSRHLPN
DILRELHGFI HMFEDTPEFV ARHIIREAKV YLDSLAPPFF KELVKYADEG SYSWHCPGHS
GGVAFLKNPL GQMFHQFFGE NMLRADVCNA VDELGQLLDH TGPVAASERN AARIFSADHL
FFVTNGTSTS NKIVWHATVA PGDIVLVDRN CHKSILHAIT MTGAIPVFLT PTRNHFGIIG
PIPRDEFKPE NIRKKIEANP FAREALRENP DLKPRILTIT QSTYDGVVYN VEMIKDLLGD
LLDTLHFDEA WLPHATFHDF YRDMHAIGDG RPRTGALVFA THSTHKLLAG ISQASQIVVQ
DSENRTFDKH RFNEAYLMHT STSPQYAIIA SCDVAAAMME PPGGTALVEE SIAEAIDFRR
AMRKVDAEYG DDWFFSVWGP DDLSEEGIGS REDWMLKPND HWHGFGPLAE GFNMLDPIKA
TIITPGLDVD GEFGETGIPA AIVTKYLAEH GIIVEKTGLY SFFIMFTIGI TKGRWNSMVT
ELQQFKDDYD NNQPLWRVLP EFVAQHPRYE RVGLRDLCTQ IHDVYRANDI ARLTTEMYLS
DMEPALKPSD AFAKLAHRKI DRVPLDELEG RVTSILLTPY PPGIPLLIPG ERFNKTIVNY
LRFARDFNER FPGFHTDIHG LVAEEVNGRV EYFVDCVRD
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