Gene BamMC406_2320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_2320 
Symbol 
ID6176721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp2580734 
End bp2581816 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content66% 
IMG OID641682095 
Productouter membrane protein (porin)-like protein 
Protein accessionYP_001809015 
Protein GI172061363 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0798185 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.76892 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAG CTTTGGTCGC GGCCGCGCTG ATGGCTGCTG GGGTGGTTAC GGCGCACGCG 
CAGAGCAGCG TCACGCTGTA CGGTCGCCTG GATGCCGGCC TCGAGTACAT GAACGGCCTG
CAGGACGGCC ATCGCTACCG GGCGGAGAGC GGCGACTGGG GCACGAGCCT GTGGGGCTTG
AAGGGCAGCG AGGACATCGG CGGCGGCAAC AAGATCCTGT TCCACCTCGA AGGCGCGTTC
AACACGATGA ACGGCGGGCT CGGCACGAGC GGCTCGATCT GGGATCGTTT CGCGACCGTC
GGCATCTCCA ACGACCGCTA CGGTACGCTG CTGCTGGGTC GCGAACTCGC GATCGCGAAC
GGCGTGTGGG ACTTCGATCC GCTGGGCCAG TCGAGCTGGT CGTCGGCATC GCTCGTGCGC
GGCCGCAACT GGAACAAGAC CAGCAACAAC GTGTCGTACC AGTCGCCGCA GTTCTACGGC
CTCGACTTCT ACGGCCAGTT CGCGTTCTCG AACTCGACAA GCTTCAACGG CAACACGACG
GCCGGTCAGC CGGGCCGTGC GGCCGGTGCG CAGGTCACGT ACACGAACTC GCTGTTCCAG
GTGCGCGGCA TCTACGACGA AACGCGCGAC AGCAACGGCC GCTTCTCCGA CGTGTTCAAC
TATTCGCGTG AATACTTCGC GGGCCTGAAC GTGTTCCTCG GCCAGTTCAA GCTGCAAGCG
GCTTATCAGT CGTCGCACGC GGACGGCAGC GGCGGCCCGG CCGTCAACAA CGGCATCACC
GGTACCCAGC AGGTCTGGGG CGGCGTGACG TGGCAGGCCA CGCCGGCGGC CGCGCTGATC
GCAGCCGTGT ACCACGTGAA TGCGAACCAC GGTGGCGGCA ACGCGAACAT CTATACGGTC
GGCGGTTCGT ACAACATCTC GAAGCGCACG CTGTTCGACG TGCAGGTCGC GACGGTGCGC
AACAGCTCGA CGGCCAACTT CGGCCTGAAC GCGAACGGTG CGGGCACCGC CGTATCGACG
GGCAACCCGC ATCCGGGCGG CAGCCAGACC GGCGTCTACG CCGGCATCCA GCACCTGTTC
TGA
 
Protein sequence
MKKALVAAAL MAAGVVTAHA QSSVTLYGRL DAGLEYMNGL QDGHRYRAES GDWGTSLWGL 
KGSEDIGGGN KILFHLEGAF NTMNGGLGTS GSIWDRFATV GISNDRYGTL LLGRELAIAN
GVWDFDPLGQ SSWSSASLVR GRNWNKTSNN VSYQSPQFYG LDFYGQFAFS NSTSFNGNTT
AGQPGRAAGA QVTYTNSLFQ VRGIYDETRD SNGRFSDVFN YSREYFAGLN VFLGQFKLQA
AYQSSHADGS GGPAVNNGIT GTQQVWGGVT WQATPAAALI AAVYHVNANH GGGNANIYTV
GGSYNISKRT LFDVQVATVR NSSTANFGLN ANGAGTAVST GNPHPGGSQT GVYAGIQHLF