| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2272 |
|---|
| Symbol | |
|---|
| ID | 6176050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 2529477 |
|---|
| End bp | 2531816 |
|---|
| Gene Length | 2340 bp |
|---|
| Protein Length | 779 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641682045 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001808967 |
|---|
| Protein GI | 172061315 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCCG CCCGGTCCAA CCACACGCCG CCGACCCGGC CGCTGCGCGC GCCGCGCAAA
TCGCGCCGGC GTGCGCTGTT CGCGATCCCG TTGCTCGGGA TGCTGGCGCT TGCGCTGCTG
TGGGCGGTGA TCATCGCGCG ACTGTCGGTC GAAAAGGACA GCGCGTACAA GGAAGCGGCG
GCATCCGCGG CGATCCTGTC GTCCGCGCTC GAGCAGCACA CCGTCAAGGC GATCCACCAA
GTCGACCAGA TCACCCGCTT CGTCAAGTTC GAGTTCGAGA AATCGCCCGC GCACTTCAAT
CTCGCGAGCG CGGTCGAAAA AGGCGTCGTG CCGAGCGACA CGCTGATCCA GGTCTCGCTC
GTGAACGCGA AGGGTATCCT GTTCGCGAAC ACGGCCGACA TCCATCCGCA GCCGATCAAC
CTGTCGGATC GCGAGCACTT CAAGGTCCAT CTCGCGCACA ACGACGACCG CCTGTACATC
AGCAAGCCGG TGTTCGGCCG CGTGTCGAGC CACTGGACGC TGCAGATGAC GCGGCGCCTG
AACAACCCGG ACGGCAGCTT CGCGGGCATC GTCGTGGTGT CGGAAGACCC GAGCTACTTC
ACCAACGACT TCTACAACAA CGCGGCAATC GGCAAGGAAG GCGTGATCTC CGTGGTGTCC
GACACGGGCG CCGTGCTCGC GCGGCGCACC GGCTCGGTCA GCAACGCACC CGGTGCGTTC
TCCGCATCGG GCGTGTACCC GATCGCCGAG CGCGTGACGG GCACGATCAT CGATCCGATC
GACGGCGTGA CGCGCATCGT GTCGTACCGC CACCTCGACG GCTACCCGCT CGCGGTGATG
GTCGGGCTGT CGCAGAGCGA GGAATTCGCG GACTACTCCC ACACGCGCAA CGTCTACCTG
CTGATGACGA GCTTCATCAC GCTCGCGATG CTCGCGTTCT TCAGCGTCGC GACGGGGCTG
ATCGGCAAGC TGCTGGGGCG CGAGCGCGAG ATGACCCAGC TCGCCGAATA CGACCTGCTC
ACCGGCCTCG CGAACCGCTA CGCGACGCTG CGCGGGCTGC GCAACGACGT GTCGATGCCG
GCCAGCCTGT CGCGGCTCGG CCTGCTGTTC ATCGACCTCG ACAACTTCAA GACCGTCAAC
GACACGCTCG GCCACAACGC CGGCGACATC GTGCTGCAGA TGACCGCGTC GCGCCTGTCG
GATGCAGTCG GCGACGAAGG CTCGCTCGCG CGGATCGGCG GCGACGAGTT CGTGGTCGTG
ATGAAGGGCG ACGACATCGA ACGGCGCGCG GTGCGGCTCG CGGAGGCGAT CATCCGGATG
TTCGGCGAGC CGTTCGACGT GCGCGGCAGT TCGTTCGTGC TGCACGCCAG CATCGGCATC
GCGCTGCACA GCGTCGCGAA CGAAAGCGAG ATCGACCTGC TGAAGAAGGC CGACCTCGCG
ATGTACAGCG CAAAGGACGC CGGCAAGAAC TGCTATCAGT TCTACGCGCC GCACCTGTCG
CACCGCGCGG ACCACCTGAT GCGCTGGGAA CAGCAGTTGC GCGTCGCGCT CGCCGAAGGG
CAGCTGTTCC TCGCCTACCA GCCGAAGATC GACCTGACGC ACCGCACGAT CACCGGCTTC
GAGGCGCTCG CACGCTGGGA CCACCCCGAG CACGGGATCA TCTCCGCGAA CGAATTCATT
TCGATCGCCG AATCGACGGG CCTGATCGTG CCGATCGGCG ACTTCGTGAT CCGCACCGCG
TGCGAGCAGA TCGCGCGCTG GCGCGACGAC GGCCACGACA CGCTGACGCT CGCGATCAAC
ATCTCGCCGG TGCAGTTCTG GCGCGGCGAC CTGATCGAGA CGATTTCCCA GGCGCTGCAG
GACACCGGCA TCGACGCGAA CCGGCTCGAG ATCGAGATCA CCGAGACCGC GATGATGGAA
TACCCGGAGC TCGTGTCCGA GAAGATCGTC GCGCTGAAGA AGCTCGGCAT CCGGATCGCG
CTCGACGATT TCGGCACCGG CTATTCGTCG CTGTCGTACC TGCACCGCTT CTCCGTCGAC
ACGCTGAAGG TCGACCGCTC GTTCGTGCAG GCCATCCCGA ACGATCGCAG CGTGTGCGTG
ATGGTGTCGT CGATCGTGCA TCTCGCGCGC TCGCTCGGCC TGACGGTCGT CGTCGAGGGC
ACCGAGACCG AGGAGCAGAT CGCGTGGCTG TCCGCGCTCG GCGAGATCGA GGCGCAGGGC
TTCCTGTTCT CGCGCCCCGT GCCGGCCGAC GCGATTCCCG CGCTGATCGC ACGCTTCGGC
GTGCGCGGCA CCCGGCCGGA CGTCCTCACG CACCGCGCGA CCGGCAGCAC CGGCGCCTGA
|
|---|
| Protein sequence | MSSARSNHTP PTRPLRAPRK SRRRALFAIP LLGMLALALL WAVIIARLSV EKDSAYKEAA
ASAAILSSAL EQHTVKAIHQ VDQITRFVKF EFEKSPAHFN LASAVEKGVV PSDTLIQVSL
VNAKGILFAN TADIHPQPIN LSDREHFKVH LAHNDDRLYI SKPVFGRVSS HWTLQMTRRL
NNPDGSFAGI VVVSEDPSYF TNDFYNNAAI GKEGVISVVS DTGAVLARRT GSVSNAPGAF
SASGVYPIAE RVTGTIIDPI DGVTRIVSYR HLDGYPLAVM VGLSQSEEFA DYSHTRNVYL
LMTSFITLAM LAFFSVATGL IGKLLGRERE MTQLAEYDLL TGLANRYATL RGLRNDVSMP
ASLSRLGLLF IDLDNFKTVN DTLGHNAGDI VLQMTASRLS DAVGDEGSLA RIGGDEFVVV
MKGDDIERRA VRLAEAIIRM FGEPFDVRGS SFVLHASIGI ALHSVANESE IDLLKKADLA
MYSAKDAGKN CYQFYAPHLS HRADHLMRWE QQLRVALAEG QLFLAYQPKI DLTHRTITGF
EALARWDHPE HGIISANEFI SIAESTGLIV PIGDFVIRTA CEQIARWRDD GHDTLTLAIN
ISPVQFWRGD LIETISQALQ DTGIDANRLE IEITETAMME YPELVSEKIV ALKKLGIRIA
LDDFGTGYSS LSYLHRFSVD TLKVDRSFVQ AIPNDRSVCV MVSSIVHLAR SLGLTVVVEG
TETEEQIAWL SALGEIEAQG FLFSRPVPAD AIPALIARFG VRGTRPDVLT HRATGSTGA
|
|---|
| |