| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2102 |
|---|
| Symbol | |
|---|
| ID | 6176297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 2348441 |
|---|
| End bp | 2349061 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641681869 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001808798 |
|---|
| Protein GI | 172061146 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACC GCATCGTCGC CGCGTTCGAT TTCGACGGCA CCATCACGAC CACCGACAGC
TTCCGCCATT TCGTCCGCTA CGCGGTCGGC ACGCCGCGCT TCGCGTGGGC CGGGCTGCGC
GCGCTGCCGT GGATCGTCGC GATGAAAGCC GGGCTGCTGT CGCGCGGCGA TGCGAAGGCG
AAGTTCGCGT GGTTTGCATT CGGCCCGATG GGCGACGACG CGCTCGATGC GCTCGCGCGC
CGATTCGTCG ACGGCTATCT GCCGAACCTC GTGCGTCCCG ACATGCTGGA ACGGGTGCGC
GAGCATCGCG CGCGTGGGCA CGAAGTCGTG CTGGTGAGCG CGTCGCCGTC GCTGTATCTG
GAGAAGTGGG CGAAGACGGC GGGCATCGAT ACGGTGCTCG CGACGCGCCT CGCGTTCGAG
CGCGGCAGGT TCACCGGGCG GCTGAACGGC GAGAACTGCT GGGGCCCGCA GAAAGTCGTG
CGGCTGCGCG GCTGGTGGGG AAATCGGACA CCCGCGAAAC TGTTCGCCTA CGGCGACAGC
CGCGGCGACA AGGAAATGGC CGAACTCGCG AACTGGGCAT GGATCCGCGG GCACGGACCG
ATGCCGCCGA TCGGCGACTG A
|
|---|
| Protein sequence | MTDRIVAAFD FDGTITTTDS FRHFVRYAVG TPRFAWAGLR ALPWIVAMKA GLLSRGDAKA
KFAWFAFGPM GDDALDALAR RFVDGYLPNL VRPDMLERVR EHRARGHEVV LVSASPSLYL
EKWAKTAGID TVLATRLAFE RGRFTGRLNG ENCWGPQKVV RLRGWWGNRT PAKLFAYGDS
RGDKEMAELA NWAWIRGHGP MPPIGD
|
|---|
| |