| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2074 |
|---|
| Symbol | |
|---|
| ID | 6176915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 2318593 |
|---|
| End bp | 2319675 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641681841 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001808771 |
|---|
| Protein GI | 172061119 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGACGA ACGTGACGAG AATGATTCGA TTCGCAGTAC CGACGATGGC GGGCCTGCTC
GCCGCGAGCG GCGCGATGGC GCAGGGCAGC GTGACGCTGT ACGGCATCGT CGACCAGAGC
ATCCGCTACA CGACGCATGC GAATGCGTCG AACGACGCGA GCGTGCAGAT GGCCAACGGC
GCGATCACGA ACAGCCGCTG GGGCCTGAAG GGCAGTGAAG CGCTCGGCGG CGGGCTGAAG
GCGATCTTCC AGCTCGAGAG CGGCTTCGAG CCGCAGAACG GGCAGCTCGA CGGCGCGCTG
TTCGGCCGCT ACGCATATGT CGGCCTCGCG AGCGATTGGG GCACCGTGAA GCTCGGCAGG
CAGGCGACCG AGGCATTCAA CCTGTTCGGC GATCTCGATC CGCTGACGGT CGGCAACTAC
ACGGCCAACA TGTGGCCGTA CCTCCTCACG CAGGGCCGCG CAAGCAACAC CGTCAGCTAC
GACGGCACGT TCGGCGGGCT GGACGTCGGC GCGAGCTACG GTTTCGGCGG CGTCGCGGGC
AGCCTCGGCG CGAATGCGTA CTGGGGCACG CACGTGTCGT ACACGCTCGG CGGACTGATG
GTCGGTGCGA CCTACCAGCA GGTGCGCGAC CTGAACAGCC GTGCACAGCA GGCCTGGGGC
GCGGGCGCAC GCTACGCGAT CGGCGCGGCG ACGCTGTACG CCGGCTATCT CGGCGGCATC
GACCGCACGG GCATGCTCGA TCGGCAGCTG CTGAACGCGC CGGGCCGCGA CGTGAGCTAC
GGTTCGTTCG CCGACAACCC GCGCCGCGAC GCGATCTTCT ACACCGGTGT GAGCGTGAAG
GTCACGCCGG CAGTATCGGT GACGGGCGTC GCGTACTACG ACGACATCCG CAACGTCAAC
GGCGTGGCAG GTAACGGCGG CAAGCGTTAT ACGGGCGTGC TCGAGGCCGA GTACGCGCTG
TCGAAGGCGA CGCAGGTCTA CGCGACGCTC GACTACAACC GGGTGACCGG CGGCGCGTTC
ACCGAAATGC CCGGACGCGG CAACCAGACG GGCCTCGCGG CCGGCCTGCG CCACCTGTTC
TGA
|
|---|
| Protein sequence | METNVTRMIR FAVPTMAGLL AASGAMAQGS VTLYGIVDQS IRYTTHANAS NDASVQMANG
AITNSRWGLK GSEALGGGLK AIFQLESGFE PQNGQLDGAL FGRYAYVGLA SDWGTVKLGR
QATEAFNLFG DLDPLTVGNY TANMWPYLLT QGRASNTVSY DGTFGGLDVG ASYGFGGVAG
SLGANAYWGT HVSYTLGGLM VGATYQQVRD LNSRAQQAWG AGARYAIGAA TLYAGYLGGI
DRTGMLDRQL LNAPGRDVSY GSFADNPRRD AIFYTGVSVK VTPAVSVTGV AYYDDIRNVN
GVAGNGGKRY TGVLEAEYAL SKATQVYATL DYNRVTGGAF TEMPGRGNQT GLAAGLRHLF
|
|---|
| |