| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2009 |
|---|
| Symbol | |
|---|
| ID | 6178911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 2239621 |
|---|
| End bp | 2240253 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641681775 |
|---|
| Product | Sua5/YciO/YrdC/YwlC family protein |
|---|
| Protein accession | YP_001808706 |
|---|
| Protein GI | 172061054 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0009] Putative translation factor (SUA5) |
|---|
| TIGRFAM ID | [TIGR00057] Sua5/YciO/YrdC/YwlC family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.254165 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000210728 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCAGT TCTTCAGGAT TCACCCGGAT AATCCGCAGC CGCGCCTGAT CAAGCAGGCC
GCGGACATCG TCAGCAAGGG CGGCGTGATC GCGATGCCGA CCGATTCGAG CTACGCGCTC
GCGTGCCACC TCGACGACAA GGACGCGGTC GAGCGCGTGC GCCGCATCCG CGGCCTCGAC
GACAAGCAGC ACCTGTCGCT GCTCGTGCGC GACCTGTCGG AGCTGGCCAA CTTCGCGATG
GTGGACAACC GCCAGTACCG GCAGATCAAG TCGGTGACGC CGGGCCCGTA CGTGTTCATC
CTGCAGGCGA CGAAGGAAGT ACCGCGCCGG CTGTCGCACC CGTCGCGCAA GACGATCGGG
CTGCGCGTGC CCGATCACGC GATCACGCTC GCGCTGCTCG AATCGCTCGG GCAGCCGCTG
CTCGGCACGA CGCTGATCCT GCCGCCGGAC GACGAGCCGC TCAACGATCC GGAGGATATC
CGCGCGCGGC TCGAGAAGCA GGTCGATCTC GTGATCGACG GCGGTGCGTG TCCGCGCGAG
CCGTCGACGG TGATCGACCT GACGGGCGAC GAGCCGCAGC TCGTGCGCGC GGGGCGCGGC
GCGCTCGAAC CGTTCGGGCT CGTGGCCGCG TAA
|
|---|
| Protein sequence | MSQFFRIHPD NPQPRLIKQA ADIVSKGGVI AMPTDSSYAL ACHLDDKDAV ERVRRIRGLD
DKQHLSLLVR DLSELANFAM VDNRQYRQIK SVTPGPYVFI LQATKEVPRR LSHPSRKTIG
LRVPDHAITL ALLESLGQPL LGTTLILPPD DEPLNDPEDI RARLEKQVDL VIDGGACPRE
PSTVIDLTGD EPQLVRAGRG ALEPFGLVAA
|
|---|
| |