| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2001 |
|---|
| Symbol | |
|---|
| ID | 6178871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 2232267 |
|---|
| End bp | 2233487 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641681767 |
|---|
| Product | cupin 4 family protein |
|---|
| Protein accession | YP_001808698 |
|---|
| Protein GI | 172061046 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2850] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.484534 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000254865 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAACC GGTCTCAAGC CGAACCGCGG GATGCCGCTG CCGCCCCGCT CGGCGCGCCT
CCTTCCGATC TTCCCACACC GCTGCTCGGC GGTCTCTCGC CGGCGCAATT CATGCGCCGC
TACTGGCAGA AAAAGCCGCT GTTGATCCGT CAGGCGATCC CCGGCGTGAA GCCGCCGGTC
ACGCGCGACG CACTGTTCGA ACTGGCAGCC GACTATGACG CCGAATCGCG ACTGATCACC
CATTTTCGTA ACAAGTGGCA ACTCGCGCAC GGCCCATTCG AGCCGGGCGC GCTGCCCGCC
GTGTCGCGCA AATCCTGGTC CCTGCTCGTG CAGGGGCTCG ACCTGCACGT CGACGCGGCC
CGCGCGCTGC TCGACCGCTT CCGCTTCATC CCGGACGCGC GCCTCGACGA CCTGATGATT
TCGTACGCGA CGGACGGCGG CGGCGTCGGC CCGCACTTCG ACTCGTATGA CGTGTTCCTG
CTGCAGGTCG AGGGCCGGCG CCGCTGGCGC ATCGGCGCGC AGAAGGATCT GTTGCTGCAA
CCGGACGTGC CGCTGAAGAT CCTCGAGCAT TTCGAGCCGA GCGACGAGTG GGTGCTGGAG
CCGGGCGACA TGCTGTACCT GCCGCCGCAC ATCGCGCACG ACGGCGTGGC CGAAGGAGAA
TGCATGACCT GCTCGATCGG CTTTCGGGCA CCGTCCGCCG GCGAGTTGGG CGCGCAATTC
CTGTACTACC TCGCGGAACG CGGCGGGCTG CGTGACGGGC GCGGCGACGC GCTCTACCGC
GACCCGAAGC AGCCGGCGGT CGACACGCCG GCGCAACTGC CGCCGGCGAT GGTCGATCGC
GTCGCCGAGA TCGTCGATGC GATCCGCTGG CGCAAGCGCG ACGTCGCCGA ATTCCTGGGC
TGCTATCTGA GCGAGCCGAA ATCTAGCGTG GTATTCGAGC CGCCGGCACG CCCGCTGTCC
GAGGCGGCGT TCGTCACGCA GGCTTCTCGC CGTGGCGTAT ATCTCGACAG AAGGGCCGCA
TTGATGTATA ACGCGCGATC GTACTTCATT AATGGTGAAG AAGAACCGCT CGAGCAAGCC
GGCGAATGGC TGCCCGAACT GGCCAATCTG CGCCATATGG AGGCGAAACG GTTTGTAACA
CTCTCCCGGG CTCCCTCCAT GACAGCCTTG CTGCACGAGT GGTATTGTGC GGGCTGGATA
CGGGTCGGAA ACCGGATTTA G
|
|---|
| Protein sequence | MRNRSQAEPR DAAAAPLGAP PSDLPTPLLG GLSPAQFMRR YWQKKPLLIR QAIPGVKPPV
TRDALFELAA DYDAESRLIT HFRNKWQLAH GPFEPGALPA VSRKSWSLLV QGLDLHVDAA
RALLDRFRFI PDARLDDLMI SYATDGGGVG PHFDSYDVFL LQVEGRRRWR IGAQKDLLLQ
PDVPLKILEH FEPSDEWVLE PGDMLYLPPH IAHDGVAEGE CMTCSIGFRA PSAGELGAQF
LYYLAERGGL RDGRGDALYR DPKQPAVDTP AQLPPAMVDR VAEIVDAIRW RKRDVAEFLG
CYLSEPKSSV VFEPPARPLS EAAFVTQASR RGVYLDRRAA LMYNARSYFI NGEEEPLEQA
GEWLPELANL RHMEAKRFVT LSRAPSMTAL LHEWYCAGWI RVGNRI
|
|---|
| |