Gene BamMC406_1968 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_1968 
Symbol 
ID6178088 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp2196115 
End bp2197530 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content72% 
IMG OID641681733 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_001808665 
Protein GI172061013 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000949064 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGACC GTACGCTCGC TGCATGGCTC GGCAGCGTCG CGCTGCTCGC CGGCTGTTCG 
TTCGCGCCGA CATATCACGC GCCGGCCGTG CCGGTGCCGG CCGCGTTTCG CGAAACCGGC
CCGTGGGTCG ATGCCGCACC GGCCGATCGT CTGCCGCGCG ACGGCTGGTG GCGTGTGTAC
GGCGACGCGA CACTCGACCG GCTCGAACCG CTCGTCGCAC GCGCGAATCC GGACCTCGCC
GCCGCCGTCG CACGGCACGA CGAAGCGGCC GCCTTGTTCG ACGAGACGCA TGCCGCGTTG
CTGCCGACCC TCGGCATCGG CGCCGAGACC GACCGCGACC GGCAGTCCGC GCGCCGGCCG
CTGCGCGGCA GCGGGCAGCC CGACGTCTAC GAATCGAACA CGCTCGACGC GGGGCTCGGT
TACGACATCG ATCTGTGGGG CAAGGTCCGC AACACGGTCG CTGCCGGCCG CGACAACGCA
CAAGCCGCGG CCGATGATCT TGCGTCCGTG CAGCTCAACC TGCAGGCCCG CGTCGCCAGC
ACCTACTTCG ATCTCGCGGA ACTCGATCGT GAAGCAGACT CGCTCGCGCA GACGATCGAT
GCATATCGCC GTGCATGGCA ACTGACGGTC AGCCGCCATC GCGGGGGCCT CGCATCGGGA
CTCGACGTGT CGCGCGCGCA AACGCAGCTC GCGCTCGCGC AGGCGCACGC ATCCGACATC
GCCGCGCGCC GTGCGCTCGA CGAGCATGCG ATCGCCGTGC TCGTCGGCGT ATCCGCGTCG
ACGTTCTCGC TACCGGCCGC CGCCGCGCTG CCCGCCGTTC CGTCGATTCC GACCGGGCTC
GCGTCGACGC TGCTCGAACG CCGCCCGGAC ATCGCCGCCG CCGAACGCCG CGTCGCGGCC
GCGAACGCAC GGATCGGCGT CGCGCGCGCC GCGTACTTCC CGGACCTGTC GCTCGGCCTC
GACGCGGGCT TCCAGAGCGA CACGTTCTCG CCGTGGCTCG CCGCACCGAA CGAAATCTGG
TCGATCGGGC CGCGGCTCGC GACGACACTG TTCGACGGCG GCCTGCGTGC GGCGGGTGTG
CACCACGCGC GCGCGCAGTT CGCCGAACAG GGCGCACGTT ACCGAAGCGT CGTACTGGCC
GCGTTCCGCG AAGTCGAGGA CGATCTCGCG CTGCTGCACC GGCTCGGAGA CGAATCGGCG
CAGGACGACG CCGCGCTCGT CGCGGCGCGG CAGTCGCTCG CGCTTGCGAT GTCGCGCTAT
CGCGACGGTG CCGTCAGCTA TCTCGACGTG GTCACCGCGC AGACGACCGA GCTCGATACT
CAGATCGCGG CGCTCGACGT CGATGCCCGA CGCCTGCAGG CGTCCGTCGC GCTCGTACGC
GCGCTCGGCG GCGGCTGGCG CGACGCGCGT TCATGA
 
Protein sequence
MADRTLAAWL GSVALLAGCS FAPTYHAPAV PVPAAFRETG PWVDAAPADR LPRDGWWRVY 
GDATLDRLEP LVARANPDLA AAVARHDEAA ALFDETHAAL LPTLGIGAET DRDRQSARRP
LRGSGQPDVY ESNTLDAGLG YDIDLWGKVR NTVAAGRDNA QAAADDLASV QLNLQARVAS
TYFDLAELDR EADSLAQTID AYRRAWQLTV SRHRGGLASG LDVSRAQTQL ALAQAHASDI
AARRALDEHA IAVLVGVSAS TFSLPAAAAL PAVPSIPTGL ASTLLERRPD IAAAERRVAA
ANARIGVARA AYFPDLSLGL DAGFQSDTFS PWLAAPNEIW SIGPRLATTL FDGGLRAAGV
HHARAQFAEQ GARYRSVVLA AFREVEDDLA LLHRLGDESA QDDAALVAAR QSLALAMSRY
RDGAVSYLDV VTAQTTELDT QIAALDVDAR RLQASVALVR ALGGGWRDAR S