Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1968 |
Symbol | |
ID | 6178088 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 2196115 |
End bp | 2197530 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641681733 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001808665 |
Protein GI | 172061013 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.000949064 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGACC GTACGCTCGC TGCATGGCTC GGCAGCGTCG CGCTGCTCGC CGGCTGTTCG TTCGCGCCGA CATATCACGC GCCGGCCGTG CCGGTGCCGG CCGCGTTTCG CGAAACCGGC CCGTGGGTCG ATGCCGCACC GGCCGATCGT CTGCCGCGCG ACGGCTGGTG GCGTGTGTAC GGCGACGCGA CACTCGACCG GCTCGAACCG CTCGTCGCAC GCGCGAATCC GGACCTCGCC GCCGCCGTCG CACGGCACGA CGAAGCGGCC GCCTTGTTCG ACGAGACGCA TGCCGCGTTG CTGCCGACCC TCGGCATCGG CGCCGAGACC GACCGCGACC GGCAGTCCGC GCGCCGGCCG CTGCGCGGCA GCGGGCAGCC CGACGTCTAC GAATCGAACA CGCTCGACGC GGGGCTCGGT TACGACATCG ATCTGTGGGG CAAGGTCCGC AACACGGTCG CTGCCGGCCG CGACAACGCA CAAGCCGCGG CCGATGATCT TGCGTCCGTG CAGCTCAACC TGCAGGCCCG CGTCGCCAGC ACCTACTTCG ATCTCGCGGA ACTCGATCGT GAAGCAGACT CGCTCGCGCA GACGATCGAT GCATATCGCC GTGCATGGCA ACTGACGGTC AGCCGCCATC GCGGGGGCCT CGCATCGGGA CTCGACGTGT CGCGCGCGCA AACGCAGCTC GCGCTCGCGC AGGCGCACGC ATCCGACATC GCCGCGCGCC GTGCGCTCGA CGAGCATGCG ATCGCCGTGC TCGTCGGCGT ATCCGCGTCG ACGTTCTCGC TACCGGCCGC CGCCGCGCTG CCCGCCGTTC CGTCGATTCC GACCGGGCTC GCGTCGACGC TGCTCGAACG CCGCCCGGAC ATCGCCGCCG CCGAACGCCG CGTCGCGGCC GCGAACGCAC GGATCGGCGT CGCGCGCGCC GCGTACTTCC CGGACCTGTC GCTCGGCCTC GACGCGGGCT TCCAGAGCGA CACGTTCTCG CCGTGGCTCG CCGCACCGAA CGAAATCTGG TCGATCGGGC CGCGGCTCGC GACGACACTG TTCGACGGCG GCCTGCGTGC GGCGGGTGTG CACCACGCGC GCGCGCAGTT CGCCGAACAG GGCGCACGTT ACCGAAGCGT CGTACTGGCC GCGTTCCGCG AAGTCGAGGA CGATCTCGCG CTGCTGCACC GGCTCGGAGA CGAATCGGCG CAGGACGACG CCGCGCTCGT CGCGGCGCGG CAGTCGCTCG CGCTTGCGAT GTCGCGCTAT CGCGACGGTG CCGTCAGCTA TCTCGACGTG GTCACCGCGC AGACGACCGA GCTCGATACT CAGATCGCGG CGCTCGACGT CGATGCCCGA CGCCTGCAGG CGTCCGTCGC GCTCGTACGC GCGCTCGGCG GCGGCTGGCG CGACGCGCGT TCATGA
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Protein sequence | MADRTLAAWL GSVALLAGCS FAPTYHAPAV PVPAAFRETG PWVDAAPADR LPRDGWWRVY GDATLDRLEP LVARANPDLA AAVARHDEAA ALFDETHAAL LPTLGIGAET DRDRQSARRP LRGSGQPDVY ESNTLDAGLG YDIDLWGKVR NTVAAGRDNA QAAADDLASV QLNLQARVAS TYFDLAELDR EADSLAQTID AYRRAWQLTV SRHRGGLASG LDVSRAQTQL ALAQAHASDI AARRALDEHA IAVLVGVSAS TFSLPAAAAL PAVPSIPTGL ASTLLERRPD IAAAERRVAA ANARIGVARA AYFPDLSLGL DAGFQSDTFS PWLAAPNEIW SIGPRLATTL FDGGLRAAGV HHARAQFAEQ GARYRSVVLA AFREVEDDLA LLHRLGDESA QDDAALVAAR QSLALAMSRY RDGAVSYLDV VTAQTTELDT QIAALDVDAR RLQASVALVR ALGGGWRDAR S
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