Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1960 |
Symbol | |
ID | 6178561 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 2184276 |
End bp | 2184947 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641681725 |
Product | NLP/P60 protein |
Protein accession | YP_001808657 |
Protein GI | 172061005 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0530532 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.36825 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCATC GATCCTTGAC CCAGGCATGC GCGCGCACCA TCGCCGGGCT CTTCATCGGC GCCCTGTTCG CAGCAGCTCC CGGCGCGTTC GCCGACGAAG TCAGTAGTTT TAACCAGAAT GCCAGCAATT CGACTCAGAT CGGGTCGGGT TCCTCCCTCC AGCAGACCAG CGCGCAGCCG TCGAGCGGCG GTGCGAAGTC GTTCCTCGCC GGCATGGCGG GCAAGGCAGG CGACGTGGTC GTCGGCGCGC TCAACATGAT CGGCGTGCGC TATCGCTGGG GCGGCAACTC GCCGGATTCG GGCCTCGACT GCAGCGGCTT CGTGCGTTAT GTGTTCCAGG ACACGCTCGG CATGTCGCTG CCGCGCCGTG CGGAAGAAAT GAGCCGCGTG GGCGAGAAGG TCAGCATGAG CAACCTGAAG CCGGGCGACC TCGTGTTCTT CAACACGATG CGCCGTACGT TCTCGCACGT CGGCATCTAT ATCGGTGACA ACAAGTTCGT GCATTCGCCG TCGACTGGCA GCACCATTCG CGTCGACGAT CTCGACAACG GCTACTGGGA AAAGCGGTTC ACCGGCGCGC GCCGGCTCGA ATCGGAGTTT CCGATGAAGG CCGACGACCT GCGCCAGCGC GTGCGCGCGA CGATCGGCGA CGACGCGAAC GGCAGCAACT GA
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Protein sequence | MQHRSLTQAC ARTIAGLFIG ALFAAAPGAF ADEVSSFNQN ASNSTQIGSG SSLQQTSAQP SSGGAKSFLA GMAGKAGDVV VGALNMIGVR YRWGGNSPDS GLDCSGFVRY VFQDTLGMSL PRRAEEMSRV GEKVSMSNLK PGDLVFFNTM RRTFSHVGIY IGDNKFVHSP STGSTIRVDD LDNGYWEKRF TGARRLESEF PMKADDLRQR VRATIGDDAN GSN
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