| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1959 |
|---|
| Symbol | |
|---|
| ID | 6178559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 2183237 |
|---|
| End bp | 2184145 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641681724 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_001808656 |
|---|
| Protein GI | 172061004 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00223857 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.276293 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCCC CTCGCCTGTC GCGCCGTCAC TTCACGATCG CGTGCGCGTC CGCCAGCCTC
GCCGCCTGTA CGTCGTTCGG CGACAAATCC CGTCCCGCGC AGTCGCAGGA AAAACCCGTG
AAGATCGGCA TCGCGCTCGG CGGCGGCGCC GCCCGCGGCT TCTCGCACAT CGGCGTGCTG
AAGGCGCTCG AGGCACGCGG CATCCCGGTC GAGCTCGTCG CGGGCACGAG CGCGGGCTCG
GTGGTCGGCG CGCTCTACGC GTCCGGGATG AGCGCGCTGC AGATCAACAA GATCGCGCTC
GACATGGATC AGGCGGCGAT CAGCGACTGG GCGCTGCCGT TCCGCTCGCG CGGATTGCTG
CAGGGCGTCG CGCTGCAGAA CTTCCTGAAC AAGACGCTCA ACAACCGGCC GATCGAGAAG
ATGGCGAAGC CGCTCGGCAT CGTCGCGACG GATCTGCAGA GCGGCCAGCC GATCCTGTTC
CAGCAGGGCA ATACGGGGCT CGCGGTGCGC GCGTCGTGCA GCGTGCCGTC GGTGTTCGAA
CCAGTGAGGA TCGGCAACCG CGAGTATGTC GACGGCGGCC TCGTGAGCCC GGTGCCCGCG
TCGTTCGCGC GCAAGATGGG CGCGAGCTTC GTGATCGCGG TCGACATCTC GGCGCGGCCG
GACGGCGCGG CGACCAACAA CCCCATCGAG ATGCTGCTGC AGACCTTCAC GATCATGGGA
CAGACGATCA AGTCGTACGA GCTCGACAAG TACGCGGACG TCGTGATCCG CCCGAACCTC
GCGGCGATGG GCGGCAGCGA CTTCAACCAG CGCAACGCGG CCATCCTCGC GGGCGAGGAA
GCGGTCGCGC GCATCATGCC GGAGCTGCAG CGCAAGCTCG CGGCGGCCCG CGGCGTCGCG
GCGGCGTAA
|
|---|
| Protein sequence | MSSPRLSRRH FTIACASASL AACTSFGDKS RPAQSQEKPV KIGIALGGGA ARGFSHIGVL
KALEARGIPV ELVAGTSAGS VVGALYASGM SALQINKIAL DMDQAAISDW ALPFRSRGLL
QGVALQNFLN KTLNNRPIEK MAKPLGIVAT DLQSGQPILF QQGNTGLAVR ASCSVPSVFE
PVRIGNREYV DGGLVSPVPA SFARKMGASF VIAVDISARP DGAATNNPIE MLLQTFTIMG
QTIKSYELDK YADVVIRPNL AAMGGSDFNQ RNAAILAGEE AVARIMPELQ RKLAAARGVA
AA
|
|---|
| |