| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1939 |
|---|
| Symbol | |
|---|
| ID | 6178219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 2161465 |
|---|
| End bp | 2162841 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641681698 |
|---|
| Product | DNA repair protein RadA |
|---|
| Protein accession | YP_001808637 |
|---|
| Protein GI | 172060985 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1066] Predicted ATP-dependent serine protease |
|---|
| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.763295 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGAAAC AGAAAACCGT CTATGTCTGC AGCGAGTGCG GCGGACAAAC CCCGAAGTGG
CAAGGGCAAT GCCCGTCGTG CCAGGCCTGG AACACCCTCG TCGAATCGGT TGCCGAGTCG
CCGGCCGCCC ATCGCTTCCA GTCGCTCGCG AAGCGGGCGC CGGTGCAGCG GCTCGTCGAC
ATCGAGGCGG CCGACGTGCC GCGCTTCTCC ACCGGCATCG GCGAATTCGA CCGCGTGCTG
GGCGGCGGGC TGGTGCCGGG AGGCGTCGTG CTGATCGGCG GCGATCCGGG CATCGGCAAG
TCGACGCTGC TGCTGCAGTC GCTCGCGGAC ATCGCGAACG AGCGGCGCGC GCTCTATATC
AGCGGTGAGG AATCGGCCGC GCAGATCGCG TTGCGCGCGC AACGGCTCGC GCTGCTCGAC
GGCGGCGCGC CGGCGGCCGA GCTGAAGCTG CTCGCCGAGA TCCAGCTCGA GAAGATCCAG
GCCGCGATCG ACGCGGAACG GCCGGACGTC GCCGTCATCG ACTCGATCCA GACCGTCTAT
TCGGAAGCGC TGACGTCGGC GCCCGGCTCG GTCGCGCAGG TGCGCGAATG CGCGGCGCAG
CTCACGCGCA TCGCGAAGCA GTCGGGCACC GCGATCATCA TGGTCGGGCA CGTGACGAAG
GAGGGCAACC TCGCCGGCCC GCGCGTGCTC GAGCACATCG TCGACACGGT GCTGTACTTC
GAGGGCGACA CCCATTCGTC GTTCCGGCTC GTGCGCGCGT TCAAGAACCG CTTCGGCGCG
GTCAACGAAC TCGGCGTGTT CGCGATGACC GAGCGCGGGC TGCGCGGCGT CGCGAACCCG
TCCGCGCTGT TCCTGTCGCA GCACGAGCAG GTCGTGCCGG GTTCCTGCGT GCTCGTCACG
CAGGAGGGCA CGCGCCCGCT GCTCGTCGAA GTCCAGGCGC TCGTCGATAC GGCGCACGTG
CCGAACCCGC GCCGGCTCGC GGTCGGCCTC GAGCAGAACC GGCTCGCGAT GCTGCTCGCG
GTGCTGCACC GGCACGCGGG CATCGCGTGT TTCGACCAGG ACGTGTTCCT GAACGCGGTG
GGCGGCGTGA AGATCACCGA ACCGGCCGCT GACGTCGCCG TGCTGCTCGC GATTCATTCG
TCGATGCGCA ACAAGGCGCT GCCGAAGGGC TTGATCGTAT TCGGCGAGGT GGGGCTGGCG
GGCGAGATCC GGCCGTCCCC GCGTGGCCAG GAACGGCTGC GCGAGGCCGC GAAGCTCGGC
TTCACGGCCG CGCTGATCCC GAAGGCGAAT GCGCCGAAGC AGCCGATCGA AGGGCTGAAC
GTGATGGCCG TCGAGCGGAT CGAGCAAGCG ATCGACCGCG TGCGCGATCT CGAATGA
|
|---|
| Protein sequence | MAKQKTVYVC SECGGQTPKW QGQCPSCQAW NTLVESVAES PAAHRFQSLA KRAPVQRLVD
IEAADVPRFS TGIGEFDRVL GGGLVPGGVV LIGGDPGIGK STLLLQSLAD IANERRALYI
SGEESAAQIA LRAQRLALLD GGAPAAELKL LAEIQLEKIQ AAIDAERPDV AVIDSIQTVY
SEALTSAPGS VAQVRECAAQ LTRIAKQSGT AIIMVGHVTK EGNLAGPRVL EHIVDTVLYF
EGDTHSSFRL VRAFKNRFGA VNELGVFAMT ERGLRGVANP SALFLSQHEQ VVPGSCVLVT
QEGTRPLLVE VQALVDTAHV PNPRRLAVGL EQNRLAMLLA VLHRHAGIAC FDQDVFLNAV
GGVKITEPAA DVAVLLAIHS SMRNKALPKG LIVFGEVGLA GEIRPSPRGQ ERLREAAKLG
FTAALIPKAN APKQPIEGLN VMAVERIEQA IDRVRDLE
|
|---|
| |