| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1933 |
|---|
| Symbol | |
|---|
| ID | 6177327 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 2154580 |
|---|
| End bp | 2155719 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641681692 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_001808631 |
|---|
| Protein GI | 172060979 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.55211 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCA CCCTAGCCCT TACCGAACAG CTGATCGCCC GCGCGTCCGT CACGCCCGAC
GACCAGCATT GCCAGCAGAT CATGACCGAG CGCCTCGCCG CGCTCGGCTT CGAATGCGAG
ACCATCGCGT CGCACGGCGT GACCAACCTG TGGGCCGTCA AGCGCGGCGC CGACGGCCGT
GACGGCAAGC TGCTCGCGTT CGCGGGCCAC ACCGACGTCG TGCCGACCGG CCCGCTCGAG
CAGTGGACCT CGCCGCCGTT CGTCCCCGCG CATCGCGACG GCAAGCTGTA CGGCCGCGGC
GCGGCCGACA TGAAGACGTC GCTCGCGGCG TTCGTCGTCG CGTCCGAGGA ATTCGTCGCG
GCCCACCCCG GCCACCGCGG CGCGATCGCG TTCCTGATCA CGAGCGACGA GGAAGGCCCG
GCCACCGACG GCACCGTGAA GGTCGTCGAA CTGCTCGAAG CGCGCGGCGA ACGCGTCGAC
TACTGCATCG TCGGCGAGCC GACCTCGACC GCGGAACTCG GCGACGTCGT GAAGAACGGC
CGCCGCGGCT CGATGTCGGG CGAGCTGGTC GTCAAGGGCG TGCAGGGCCA CATCGCGTAC
CCGCATCTCG CGAAGAACCC GATCCACCTG CTCGCGCCGG CGCTCGCCGA GCTCGCCGCC
GAACAGTGGG ACGCAGGCAA CGAATACTTC CCGCCGACCA CCTGGCAGGT GTCGAACCTG
CATGCCGGCA CCGGCGCGAC CAACGTGATC CCCGGCCACG CGGACCTGAT GTTCAACTTC
CGCTTTTCGA CGGCGAGCAC GGTCGAGGGC CTGCAGGCAC GCGTGCACGC GATCCTCGAC
AAGCACGGCC TCGAATACAC GCTGAAGTGG TCGGTGAGCG GCCTGCCGTT CCTCACGCCG
CGCGGCGACC TGTCGAACGC GCTGGAGAAC GCGATCCGCG CCGAGACCGG CCTCACGACC
GAGCTGTCGA CGACGGGCGG CACGTCCGAC GGACGCTTCA TCGCGCGCAT CTGCCCGCAG
GTGATCGAGT TCGGCCCGCC CAACGGCAGC ATCCACAAGA TCGACGAGCA CATCGACGTG
CGCTTCGTCG ACCCGCTGAA GAACGTGTAC CGACGCGTGC TCGAACAACT GATCGCCTGA
|
|---|
| Protein sequence | MSATLALTEQ LIARASVTPD DQHCQQIMTE RLAALGFECE TIASHGVTNL WAVKRGADGR
DGKLLAFAGH TDVVPTGPLE QWTSPPFVPA HRDGKLYGRG AADMKTSLAA FVVASEEFVA
AHPGHRGAIA FLITSDEEGP ATDGTVKVVE LLEARGERVD YCIVGEPTST AELGDVVKNG
RRGSMSGELV VKGVQGHIAY PHLAKNPIHL LAPALAELAA EQWDAGNEYF PPTTWQVSNL
HAGTGATNVI PGHADLMFNF RFSTASTVEG LQARVHAILD KHGLEYTLKW SVSGLPFLTP
RGDLSNALEN AIRAETGLTT ELSTTGGTSD GRFIARICPQ VIEFGPPNGS IHKIDEHIDV
RFVDPLKNVY RRVLEQLIA
|
|---|
| |