| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1926 |
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| Symbol | |
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| ID | 6179100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 2143583 |
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| End bp | 2145658 |
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| Gene Length | 2076 bp |
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| Protein Length | 691 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641681685 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001808624 |
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| Protein GI | 172060972 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.55791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.279266 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCGAA CCCAAGCCGA ACCGCCAGCC AGCCAGCCCG ACGCGCGTGC CGCGTGGCTG
CGCGACCAAC TCGAGCGGGC GAATTACGCC TATTACGTGC TCGACCAGCC GGATCTGCCC
GATGCCGAAT ACGATCGACT GTTCGGCGAG CTGCAGCAAC TCGAAACCGA TCATCCCGAC
CTCGTGACGC CCGATTCGCC AACGCAGCGC GTCGGCGGCG AGGTGGCCGG CGGTTTCACG
CCGGTCGTCC ATGATGCGCC GATGCTGTCG CTGAACAACG GCTTCGCCGA CGAGGACATC
GCCGCGTTCG ACAAGCGCGT CGCCGATGCG CTCGGCAAGA CGACCGATCT CGCCGGCTCG
GTGACGGACC CGGTCGAATA TGCGTGCGAG CTGAAGTTCG ACGGGCTCGC GATCTCGCTG
CGCTACGAGC ACGGCGTGTT CGTGCAGGCG TCGACGCGCG GCGACGGCAC GACCGGCGAG
GACGTGACCG AGAACGTCCG CACGATCCGC TCGATCCCGC TGAAGCTGAA GGGCGCGCAC
GTGCCGGCCC TGCTCGACGT GCGCGGCGAG GTGCTGATGT TCAAGCGCGA TTTCGCACGC
CTGAACGAAC GCCAGCGCGC GGCCGAGCAG CGCGAATTCG CGAACCCGCG CAACGCGGCG
GCCGGCAGCC TGCGCCAGCT CGATCCGAAG ATCACCGCGC AGCGTCCGCT GTCGTTCTTC
GCGTACGGGA TCGGCGTGCT CGACGGCATG CCGATGCCGG ACACGCACAG CGCGCTGCTC
GACTGGTACG AGTCGTTCGG CCTGCCGGTG AACCGCGAGC GCGCGGTCGT GTACGGCGCC
GACGGCCTGC TCGGCTTCTT CCGCAAGGTC GGCGAGAAGC GCGAGTCGTT GCCGTACGAC
ATCGACGGCG TCGTCTACAA GGTGAACCGG CGCGACGAAC AGGATCGCCT CGGCTTCGTG
TCGCGCGCAC CGCGCTTCGC GCTCGCGCAC AAGTTTCCCG CACAGGAAGC GCTGACCCGG
CTCGTCGCGA TCGACGTGCA GGTCGGCCGC ACGGGTGCGA TCACGCCGGT CGCGCGACTC
GAACCGGTGT TCGTCGGCGG CGCGACGGTG ACCAACGCGA CGCTGCACAA CGAGGACGAA
GTGCGCCGCA AGGACATCCG GATCGGCGAC ACCGTGATCG TGCGGCGGGC GGGCGACGTG
ATCCCCGAGG TCGTCGGTGC GCTGCTCGAG CGCCGGCCGG ACGACGCGGC CGAATTCGTG
ATGCCGACCG AGTGCCCGGT GTGCGGCTCG AAGATCGAGC GGCTGCCGGA CGAGGCGATC
GCGCGCTGCA CGGGCGGCCT GTTCTGCCCG GCGCAGCGCA AGCAGGCGCT GTGGCACTTC
GCGCAGCGTC GCGCGCTCGA CATCGACGGG CTCGGCGAAA AGATCATCGA TCAGCTCGTC
GAACTGAATC TCGTGCGCAC GCCGGCCGAC CTGTTCAATC TCGGTTTCGC GACGCTCGCG
GAACTCGACC GGTTCGCCGA GAAGTCCGCG CAGAATTTGC TCGACTCGCT CGAGAAGGCG
AAGCACACGA CGCTCGCGCG CTTCATCTAC GGGCTCGGCA TTCGCCATGT CGGCGAATCG
ACCGCGAAGG ATCTCGCGAA GCACTTCGGG TCACTGACCC CGATCATGGA CGCGTCGATC
GAGGAACTGC TCGAAGTCAA CGACGTCGGG CCGATCGTCG CCGAGTCGAT CCACCAGTTC
TTCGCGGAAG AACACAACCG CACCGTGATC GAGCAACTGC GCGCGCCCGG CAAGGTCACG
TGGCCCGAAG GCCCGCCCGC GCCGAAGGCG CCACAGGGCG TGCTGGCCGG CAAGACGGTC
GTGCTGACGG GCACGCTGCC GAATCTCACC CGCGACGCGG CGAAGGAGAT GCTCGAAGCG
GCGGGCGCGA AAGTCGCGGG CTCGGTATCG AAGAAGACGG ATTACGTGGT CGCGGGCGCC
GATGCCGGCA GCAAGCTCGC GAAGGCCGAG GAACTCGGCA TCCCCGTACT GGACGAAGAC
GGACTGCACC AACTCCTGGA GGGCAACACC CCATGA
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| Protein sequence | MARTQAEPPA SQPDARAAWL RDQLERANYA YYVLDQPDLP DAEYDRLFGE LQQLETDHPD
LVTPDSPTQR VGGEVAGGFT PVVHDAPMLS LNNGFADEDI AAFDKRVADA LGKTTDLAGS
VTDPVEYACE LKFDGLAISL RYEHGVFVQA STRGDGTTGE DVTENVRTIR SIPLKLKGAH
VPALLDVRGE VLMFKRDFAR LNERQRAAEQ REFANPRNAA AGSLRQLDPK ITAQRPLSFF
AYGIGVLDGM PMPDTHSALL DWYESFGLPV NRERAVVYGA DGLLGFFRKV GEKRESLPYD
IDGVVYKVNR RDEQDRLGFV SRAPRFALAH KFPAQEALTR LVAIDVQVGR TGAITPVARL
EPVFVGGATV TNATLHNEDE VRRKDIRIGD TVIVRRAGDV IPEVVGALLE RRPDDAAEFV
MPTECPVCGS KIERLPDEAI ARCTGGLFCP AQRKQALWHF AQRRALDIDG LGEKIIDQLV
ELNLVRTPAD LFNLGFATLA ELDRFAEKSA QNLLDSLEKA KHTTLARFIY GLGIRHVGES
TAKDLAKHFG SLTPIMDASI EELLEVNDVG PIVAESIHQF FAEEHNRTVI EQLRAPGKVT
WPEGPPAPKA PQGVLAGKTV VLTGTLPNLT RDAAKEMLEA AGAKVAGSVS KKTDYVVAGA
DAGSKLAKAE ELGIPVLDED GLHQLLEGNT P
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