| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1882 |
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| Symbol | ldcA |
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| ID | 6178399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 2097258 |
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| End bp | 2098196 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641681641 |
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| Product | L,D-carboxypeptidase A |
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| Protein accession | YP_001808580 |
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| Protein GI | 172060928 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1619] Uncharacterized proteins, homologs of microcin C7 resistance protein MccF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.507985 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTTCC AGCCCGCCGC GTCCTACACC ATCCGCCTGC TGGCGCCGTC CGGTTATCCG
CATGATCCCG ACGCGATCAA TCGCGCGCTC GAACGCCTGA GCGGCGCGCA GCAGCGCATC
GAGAACATCG AGGCGACGCA GCGCCGCTTT CAGCGTTTCG GCGGTACCGA CGGCGAACGG
GCAGGCGACC TGAATCGCCT GGCGGATCCG GAGCGTGCGC TGCCGGACAT CGGGCTCGCG
GTGCGCGGTG GCTACGGTGC CGCCCGCATC CTGCACGGGC TCGACTATCG CGGGCTCGAG
CGCCGCCTGC GCGACCAGCC GATCGCGCTG GTGGGCCACA GCGACTTCAC CGCGGTCCAG
CTCGCGCTGT ACGCGAAGGC GCGCATCAAG ACCTTCGGCG GCCCGATGCT GTCGGCCGAC
TTCGGCGCGG AAACGCCGAG CGACTTCACG ATGCAACACT TCTGGCAGAC GCTGTCGCAG
CCGACCACGA CGATCATCAC CGAAGCGCCG CAGGTGCAGA CCGTGAACGT GACGGGCACG
CTGTGGGGCG GCAACCTCGC GATCCTGACG TCGCTCGTCG GCACGCCGTA CATGCCCGAT
ATCGAAGGCG GCATCCTGTT CATCGAGGAC GTCAACGAGC AGCCGTTCCG GATCGAACGG
ATGATCTACC AGCTGCATCT GTCGGGGCTG CTCGCGCGCC AGCAGGCACT CGTGCTCGGG
CAGTTCACGG GCGCGCGGCC GTTCGACTAC GACAACGGCT ACGACATGCA GGCGATGATC
GACCAGGTTC GCGCGGTGAT CGGCATCCCG GTCGTCACGG GGCTGCAGTT CGGCCATGTG
CCCGACCTGC TGACGCTGCC GTTCGGCGCG CAGGCGCAGC TCGTCGCGAA TGCGCACGGT
TTCCGGCTTA CGCTGTCGGA CTATCCGTAT CTCGGCTAA
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| Protein sequence | MSFQPAASYT IRLLAPSGYP HDPDAINRAL ERLSGAQQRI ENIEATQRRF QRFGGTDGER
AGDLNRLADP ERALPDIGLA VRGGYGAARI LHGLDYRGLE RRLRDQPIAL VGHSDFTAVQ
LALYAKARIK TFGGPMLSAD FGAETPSDFT MQHFWQTLSQ PTTTIITEAP QVQTVNVTGT
LWGGNLAILT SLVGTPYMPD IEGGILFIED VNEQPFRIER MIYQLHLSGL LARQQALVLG
QFTGARPFDY DNGYDMQAMI DQVRAVIGIP VVTGLQFGHV PDLLTLPFGA QAQLVANAHG
FRLTLSDYPY LG
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