| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1878 |
|---|
| Symbol | |
|---|
| ID | 6178405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 2092660 |
|---|
| End bp | 2093658 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641681637 |
|---|
| Product | urate catabolism protein |
|---|
| Protein accession | YP_001808576 |
|---|
| Protein GI | 172060924 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | [TIGR03212] putative urate catabolism protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.312787 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.172237 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACCC TTTATTCCGG CAAGCTTTCG TCGCACTTCG AACCCATGTC ACTCGATCCC
AACTATCCTC GCGACCTGAT CGGCTACGGC CGCCATCCCG TGCAGGCGAA CTGGCCCGGG
CGTGCCCGCG TCGCCGTGCA ATTCGTGCTG AACTACGAGG AGGGCGGCGA GAACTGCGTG
CTGCACGGCG ATCCTGCCTC CGAGCAGTTC CTGTCCGAAA TCGTCGGCGC GGCCGCGTAT
CCGGACCGCC ACATGAGCAT GGAGTCGATC TACGAATACG GTTCGCGTGC CGGCGTATGG
CGCATCCTGC GCGAATTCGA GAAGCGCGGG CTGCCGCTGA CGGTGTTCGG CGTCGGCATG
GCGATCGAGC GCCATCCGGA ACTCGCGCGC GCGTTCGTCG AACTCGGTCA CGAGATCGCG
TGCCACGGCT GGCGCTGGAT CCACTACCAG AGCATGACGC CCGAGCTCGA GGCCGAGCAC
ATGCGCCTCG GGATGGAAGC GATCGAGCGC GTGACGGGCG AGCGTCCGCT CGGCTGGTAT
ACCGGCCGCG ACAGCCCGAA CACGCACCGT CTCGTCGCGG AATACGGCGG CTTCCTGTAC
GACTCCGACA ACTATGGCGA CGACCTGCCG TTCTGGATGG ACGTCGCGGT GTCGGGCGGC
GCTACGTCGC CGCAGCTGAT CGTCCCGTAC ACGCTCGATA CGAACGACAT GCGCTTCGCG
ACGCCGCAGG GCTTCAACAC CGGCGAGCAC TTCTTCGACT ACCTGCGCGA CGCATTCGAC
GTGCTGTACG CCGAGGGCGA CGAAGCGCCG AAGATGCTGT CGATCGGCAT GCACTGCCGG
CTGCTCGGCC GGCCGGGGCG TTTCCGCGGG CTGCAGCGTT TCCTCGACCA CATCGAGCAA
CACGATCGCG TATGGGTGAC GCGCCGTGTC GATATCGCGC GTCATTGGCG TGAACATCAT
CCGTATCAGC CCAATCATCG AAACGAAGGG AAAGCATGA
|
|---|
| Protein sequence | MRTLYSGKLS SHFEPMSLDP NYPRDLIGYG RHPVQANWPG RARVAVQFVL NYEEGGENCV
LHGDPASEQF LSEIVGAAAY PDRHMSMESI YEYGSRAGVW RILREFEKRG LPLTVFGVGM
AIERHPELAR AFVELGHEIA CHGWRWIHYQ SMTPELEAEH MRLGMEAIER VTGERPLGWY
TGRDSPNTHR LVAEYGGFLY DSDNYGDDLP FWMDVAVSGG ATSPQLIVPY TLDTNDMRFA
TPQGFNTGEH FFDYLRDAFD VLYAEGDEAP KMLSIGMHCR LLGRPGRFRG LQRFLDHIEQ
HDRVWVTRRV DIARHWREHH PYQPNHRNEG KA
|
|---|
| |