| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1859 |
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| Symbol | |
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| ID | 6176625 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 2071318 |
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| End bp | 2074788 |
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| Gene Length | 3471 bp |
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| Protein Length | 1156 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641681618 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001808557 |
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| Protein GI | 172060905 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0201793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000194707 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCAGACA ACGCTTCCAT CCCGTTCGCC TCGCCCGTCG CCCGCGTCAA ACCGGGCCAG
CGGTTCGCCT TCGACGGCAC GCACGGCTCC GCCGACGCAC TCGCCATCGC CCGCTATCTC
GCCGAGAACC GCGCGGCGGT CCCGCTCCTT GCGGTGATCT GCGCGAACGC GGTCGACGCG
CAGCGGCTGT CGCAGGAACT CCGCTACTTC TCGCCCGATG CGCGCGTGCG CCTGCTGCCG
GACTGGGAAA CGCTGCCGTA CGACACGTTC TCGCCGCACC AGGATCTCGT CTCCGAGCGG
CTTGCGACGC TGCACGACCT CGGCGAGGGC CGCTGCGACA TCCTGCTGGT GCCCGCGACC
ACCGCGCTGT ACCGGATGCC GCCCGCGTCG TTCATGGCCG CGTACACCTT CGCGTTCGCG
CAGGGCGAGC GGCTCGACGA GGCGAAGCTG AAGGCGCAGC TCACGCTGGC CGGCTACGAA
CACGTGAGCC AGGTCGTGCG GCCCGGCGAA TACTGCGTGC GCGGCTCGCT GATCGACCTC
TACCCGATGG GCTCGCCGCT GCCGTACCGG ATCGACCTGT TCGACGACCA GGTCGACTCG
ATCCGCGCGT TCGATCCCGA TACGCAGCGC AGCCTCTACC CGGTTCGCGA CGTGCGCCTG
TTGCCCGGCC GCGAGTTTCC GTTCGACGAA GCCGCGCGCA CGGCCTTTCG CAGCCGCTGG
CGCGAGACCT TCGAAGGCGA CCCGAGCCGC GCGCCGATCT ACAAGGACAT CGGCAACGGC
GTGCCGTCGG CCGGCATCGA GTACTACCTG CCGCTGTTCT TCGACGAGAC GGCCACGCTG
TTCCACTACC TGCCGCAGGA CGCACACCTC GTGTTCACCG GCGATCTCGA GGCGTCGATC
CGCCGCTTCA CGGCTGATAC GAAACAGCGC CACGCGTTCC TCGCGCACGA CCGCGAGCGG
CCGATCCTCG AGCCGCAGCG CCTGTTCCTG TCCGACGAGG ATTTCTTCGC GTTCGCGAAG
CCGTTCGCGC GCGTCGTGCT GCCCGCGCAG CCGGCCGGCG GCTGGGCGAC GGGCCTGCCC
GAGCTCACGG TCGATCGCCA TGCCGACGAT CCGCTCGCCG CGCTGCGCAC GTTCGTCGAA
TCATCGGGCA AGCGCGTGCT GCTGACGGTC GAATCGGCCG GCCGCCGCGA AACGATCCTG
CAACTGCTCG CCGAGCATCA CCTGCGCCCC GCGTCGAACG ACCACTTCGC GGGCTGGCTC
GAAAGCGATG CACCGTTCGC GCTCGGTGTC GCGCCGCTCG CGAACGGCTT CGTGGTGCCG
GGCGAAGGCT ACGCGATCGT CACCGAAACC GAACTGTACG GCGCGCTCGG CCGGCGCGCG
GGCCGGCGCC GCCAGGAACA GGCGAGCAAC GTCGACGCGA TGGTGCGCGA CCTGTCGGAG
CTGAAGGTCG GCGACCCGGT CGTCCACGCG CAGCACGGCA TCGGCCGCTA CATGGGCCTC
GTGTCGATGG ATCTCGGCGA AGGCGAGACC GAATTCCTGC ACCTCGAATA CGCGGGCGAC
AGCAAGCTCT ACGTGCCGGT CGCGCAATTG CACGTGATCT CGCGCTACAG CGGCGCCGAT
CCCGACAGCG CACCGCTGCA CGCGCTCGGC TCGGGCCAGT GGGAGCGCGC GAAGCGCAAG
GCCGCGCAGC AGATTCGCGA CACGGCGGCC GAGCTGCTGA ACCTGTACGC GCGCCGCGCG
GCCCGCGAGG GCCATGCGTT CGCGCTCGAT CCGCGCGACT ACGTGAAGTT CGCGGAAAGC
TTCGGCTTCG AGGAAACGCC CGACCAGGCC GCGGCCATAG CGGCCGTGAT CGGCGACATG
ACGAGCGGCA AGCCGATGGA CCGCCTCGTG TGCGGCGACG TCGGCTTCGG CAAGACCGAG
GTCGCGCTGC GCGCCGCGTT CATCGCGGTG ATGGGCGGCA AGCAGGTCGC GTTGCTGTCG
CCGACCACGC TGCTCGCCGA GCAGCACACG CAGACCTTCG TCGACCGCTT CGCGGAGTGG
CCGGTGCGCA TCGTCGAGCT GTCGCGCTTC AAGACCACGA AGGAAGTGAA TGCGGCGATC
GCTCAGATCA ACGAAGGCAC CGTCGACATC GTGATCGGCA CGCACAAGCT GCTGTCGTCG
GACGTGCAGT TCAAGCGCCT TGGCCTCGTG ATCATCGACG AGGAACACCG CTTCGGCGTG
CGCCAGAAGG AAGCGCTGAA GGCGCTGCGC GCGGAAGTCG ACGTGTTGAC GCTGACCGCC
ACGCCGATCC CGCGTACGCT CGGGATGGCG CTCGAGGGGC TGCGCGACTT CTCGGTGATC
GCGACCGCGC CGCAGAAGCG GCTCGCGATC AAGACCTTCG TGCGTCGCGA GGAAGAAAGC
GTGATCCGCG AGGCGATGCT GCGCGAGCTG AAACGCGGCG GCCAGGTGTA CTTCCTGCAC
AACGAGGTCG AGACGATCGA GAACCGCAGG GCGATGCTCG AGGAACTCGT GCCCGAGGCG
CGCATCGTGA TCGCGCACGG CCAGATGCAC GAGCGCGAAC TCGAACGCGT GATGCGCGAT
TTCGTCGCGC AGCGCGCGAA CGTGCTGCTG TGCACGACCA TCATCGAGAC CGGCATCGAC
GTGCCGAGCG CCAACACGAT CATCATGCAC CGCGCGGACA AGTTCGGCCT CGCTCAGCTT
CACCAGCTGC GCGGCCGCGT CGGCCGTTCG CACCACCAGG CGTATGCGTA CCTGCTGGTC
CACGATCCGC AGTCGCTGAC CAAGCAGGCG CAGCGCCGGC TCGAGGCGAT CCAGCAGATG
GAGGAGCTCG GTTCGGGCTT CTATCTCGCG ATGCACGACC TCGAGATCCG CGGCACCGGC
GAGGTGCTCG GCGACAAGCA GTCGGGCGAG ATCCACGAGA TCGGCTTCCA GCTGTACACC
GACATGCTGA ACGACGCGGT GAAGGCGCTG AAGAACGGCA AGGAGCCCGA CCTCACCGCA
CCGCTCGCCG CGACGACGGA AATCAACCTG CATGCGCCCG CGATCCTGCC GGCCGACTAC
TGCGCGGACG TGCAGGAGCG GCTGTCGCTG TACAAGCGTC TCGCGAACTG CGAGCACGGC
GACGCAATCG ACGGCATCCA GGAAGAGCTG ATCGACCGCT TCGGCAAGCT GCCGCCGCAG
GCGCACGCGC TCGTCGAGAC GCACCGGCTG CGGCTGGCCG CGAAGCCGCT CGGCATCGTC
AAGATCGACG CGAGCGAGGC CGCGATCGGG CTGCAGTTCG AGCCGAACCC GCCGATCGAT
CCGATGCGGA TCATCGAAAT GGTGCAGAAG CACCGGCACA TCAAGCTCGC GGGCCAGGAC
AAGCTGCGCA TCGAGACGCG CTCGCCCGAT CTCGCGATCC GCGTGTCGAC GATCAAGGAA
ACGCTGCGCG CGCTCGCGCC GCGCGCAGAC GCCGCGACCG CGGCACGCTG A
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| Protein sequence | MPDNASIPFA SPVARVKPGQ RFAFDGTHGS ADALAIARYL AENRAAVPLL AVICANAVDA
QRLSQELRYF SPDARVRLLP DWETLPYDTF SPHQDLVSER LATLHDLGEG RCDILLVPAT
TALYRMPPAS FMAAYTFAFA QGERLDEAKL KAQLTLAGYE HVSQVVRPGE YCVRGSLIDL
YPMGSPLPYR IDLFDDQVDS IRAFDPDTQR SLYPVRDVRL LPGREFPFDE AARTAFRSRW
RETFEGDPSR APIYKDIGNG VPSAGIEYYL PLFFDETATL FHYLPQDAHL VFTGDLEASI
RRFTADTKQR HAFLAHDRER PILEPQRLFL SDEDFFAFAK PFARVVLPAQ PAGGWATGLP
ELTVDRHADD PLAALRTFVE SSGKRVLLTV ESAGRRETIL QLLAEHHLRP ASNDHFAGWL
ESDAPFALGV APLANGFVVP GEGYAIVTET ELYGALGRRA GRRRQEQASN VDAMVRDLSE
LKVGDPVVHA QHGIGRYMGL VSMDLGEGET EFLHLEYAGD SKLYVPVAQL HVISRYSGAD
PDSAPLHALG SGQWERAKRK AAQQIRDTAA ELLNLYARRA AREGHAFALD PRDYVKFAES
FGFEETPDQA AAIAAVIGDM TSGKPMDRLV CGDVGFGKTE VALRAAFIAV MGGKQVALLS
PTTLLAEQHT QTFVDRFAEW PVRIVELSRF KTTKEVNAAI AQINEGTVDI VIGTHKLLSS
DVQFKRLGLV IIDEEHRFGV RQKEALKALR AEVDVLTLTA TPIPRTLGMA LEGLRDFSVI
ATAPQKRLAI KTFVRREEES VIREAMLREL KRGGQVYFLH NEVETIENRR AMLEELVPEA
RIVIAHGQMH ERELERVMRD FVAQRANVLL CTTIIETGID VPSANTIIMH RADKFGLAQL
HQLRGRVGRS HHQAYAYLLV HDPQSLTKQA QRRLEAIQQM EELGSGFYLA MHDLEIRGTG
EVLGDKQSGE IHEIGFQLYT DMLNDAVKAL KNGKEPDLTA PLAATTEINL HAPAILPADY
CADVQERLSL YKRLANCEHG DAIDGIQEEL IDRFGKLPPQ AHALVETHRL RLAAKPLGIV
KIDASEAAIG LQFEPNPPID PMRIIEMVQK HRHIKLAGQD KLRIETRSPD LAIRVSTIKE
TLRALAPRAD AATAAR
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