| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1858 |
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| Symbol | ispD |
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| ID | 6176616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 2070500 |
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| End bp | 2071147 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641681617 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_001808556 |
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| Protein GI | 172060904 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.000422318 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000130531 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCCGAAGC AATACCGCAC GCTGGCCGGC CGCGCGCTCC TGCATTACAC GCTCGCCGCG
TTCGACGCGT GCAGCGAATT CGCGCAGACG CTCGTCGTCC TCGCGCCCGA CGACACGCAC
TTCGACGCGC GCCGCTTCGC GGGCCTGCGC TTCGCGGTGC GCCGCTGCGG CGGCGGTTCG
CGGCAGGCGT CGGTGCTGAA CGGGCTGCTG GGGCTGGGCG AATTCGGCGC GACCGACCAG
GACTGGGTGC TCGTGCACGA CGCCGCACGC CCCGGTATCA CGCCGGAGCT GATCCGCACG
CTGGTCGCGG CGCTGAAGGA CGATCCGGTC GGCGGGATCG TCGCGCTGCC GGTGGCCGAT
ACGCTCAAGC GCGTGCCGGC CGGCGGCGAC GCGATCGCCC GCACCGAGTC GCGCGACGCG
CTGTGGCAGG CGCAGACGCC GCAGATGTTC CGCATCGGCA TGCTGCGCGA CGCGATCCTG
CGCGCGCAGC GGGAAGGGCA CGACCTGACC GACGAGGCCA GCGCGATCGA ATGGGCCGGT
TATACCCCGC GCGTCGTGCA GGGCAGCCTG CGCAACTTCA AGGTCACGTA CCCGGAAGAT
TTCGCACTCG CCGAAGCGAT CCTCGCGCGC GCCACGAACG CTTCCTGA
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| Protein sequence | MPKQYRTLAG RALLHYTLAA FDACSEFAQT LVVLAPDDTH FDARRFAGLR FAVRRCGGGS
RQASVLNGLL GLGEFGATDQ DWVLVHDAAR PGITPELIRT LVAALKDDPV GGIVALPVAD
TLKRVPAGGD AIARTESRDA LWQAQTPQMF RIGMLRDAIL RAQREGHDLT DEASAIEWAG
YTPRVVQGSL RNFKVTYPED FALAEAILAR ATNAS
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