| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1857 |
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| Symbol | ispF |
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| ID | 6176615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 2069985 |
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| End bp | 2070470 |
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| Gene Length | 486 bp |
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| Protein Length | 161 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641681616 |
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| Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| Protein accession | YP_001808555 |
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| Protein GI | 172060903 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0000885958 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000265423 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATTTCA GAATCGGACA AGGCTACGAC GTGCACCAGC TCGTCCCGGG GCGCCCCCTC
ATCATCGGCG GCGTGACGAT TCCGTACGAG CGCGGCCTGC TCGGCCATTC GGACGCGGAC
GTGCTGCTGC ACGCGATCAC CGACGCGCTG TTCGGCGCGG CGGCGCTCGG CGACATCGGC
CGCCATTTCT CCGACACCGA CGCCGCGTTC AAGGGGGCGG ACAGCCGCGT GCTGCTGCGC
GAGTGCGCCG CCCGCGTGAA GGCGGCCGGC TTCACGATCC AGAACGTCGA CAGCACCGTG
ATCGCGCAGG CGCCGAAGCT CGCGCCGCAT ATCGACGGGA TGCGCGCGAA CATCGCGGCC
GATCTCGGGC TGCCGCTCGA GCGCGTGAAC GTGAAGGCGA AGACCAACGA GAAGCTCGGC
TACCTCGGCC GCGGCGAGGG CATCGAGGCG CAGGCCGCCG CGCTGCTGGT GAAAGCGGGC
GCGTGA
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| Protein sequence | MDFRIGQGYD VHQLVPGRPL IIGGVTIPYE RGLLGHSDAD VLLHAITDAL FGAAALGDIG
RHFSDTDAAF KGADSRVLLR ECAARVKAAG FTIQNVDSTV IAQAPKLAPH IDGMRANIAA
DLGLPLERVN VKAKTNEKLG YLGRGEGIEA QAAALLVKAG A
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