| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1849 |
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| Symbol | |
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| ID | 6176717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 2062035 |
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| End bp | 2062868 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641681608 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_001808547 |
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| Protein GI | 172060895 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.775732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00598695 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAACTTCG ACGACTACTG TCAGCAAAAG GCCGCCCCCG CGGGCTCCAG CGTCTACTAC
GCGCTGCGCC AGGCGCCGCT CGCCGCCGAA CCGCGCCTGA CCGCCCTGTT CGCGCTGCGC
CGCGAACTCG AGGAAACCGT CAAGGAAACC AGCGACCCGA CCGTCGGACA CACGAAGCTC
GCGTGGTGGC ACAAGGAACT CGCGGCGCTC GCCGCCGGCG AACCGTCGCA CCCGGTCACG
AAGGCGCTCG CGCAGCATCA CCCGGCGATC GCGGCCGAAG CCGATGCGCT GCGCACGCTG
GTCAACGGTT ACGGGATGGA TCTCGAACAA GCGCGCTACC TGGATTTCGC GAACCTGCAG
CGCTACATCG CGCAGGTCGG CGGCACCTTC GCGTCGCTGG TCGCGCGCGC CAGCGCCGCG
AATCCGGCCG ACCCGCAGCC GTGGGCCGCG GACGCTGGCC GCGCGCTGAT GCTCGCGCAA
TTCGTGCAGG AGCTCGGCAA CGATGCGCGC CATGGCCGCA TCTATCTGCC GATCGACGAA
CTGCAACGCT ACAACGTGAC CGCGGCCGAC CTGCTGAACC GCCGCTACAG CCCGGCCTTC
ACCGAGCTGC TGCAGTTTCA GACGGCCCGC GCGCGCGAAG CGCTCGCCGC CGCCGACGCA
GCGATCCCCG CGTCCGAACG CCGCGCGCAA CGCACGCTAC GTGCGCAGAT CGCACTGGCC
GGCGCGCTGC TCCACGAAAT CGAGCGCGAC GGCTACCAGG TGCTGCACCA GCGCATCGCG
CTGACGCCGA TCCGCAAGCT GTGGATCGCG TGGCGCGCCG CGCGCCGCCG CTGA
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| Protein sequence | MNFDDYCQQK AAPAGSSVYY ALRQAPLAAE PRLTALFALR RELEETVKET SDPTVGHTKL
AWWHKELAAL AAGEPSHPVT KALAQHHPAI AAEADALRTL VNGYGMDLEQ ARYLDFANLQ
RYIAQVGGTF ASLVARASAA NPADPQPWAA DAGRALMLAQ FVQELGNDAR HGRIYLPIDE
LQRYNVTAAD LLNRRYSPAF TELLQFQTAR AREALAAADA AIPASERRAQ RTLRAQIALA
GALLHEIERD GYQVLHQRIA LTPIRKLWIA WRAARRR
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