| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1797 |
|---|
| Symbol | |
|---|
| ID | 6176858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 2003523 |
|---|
| End bp | 2004695 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641681556 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_001808498 |
|---|
| Protein GI | 172060846 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.986921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCAA TCGAGGAACT GCAGCGCATC GCCGATGCGC CGTTGCATTC ATGGCTCGGC
ACGCTGATCG TGTCGGTCAT CGTCGTGCTT GTCGTGTTGA TCGTGCATCG TCTCGGCGCA
CGCATCGTCA AGCGCATCGC GCAGCCGTAT CCGCTGATGA GCGTGATCCT GCGCTACATC
GACAAACCGT CGCTCGTCAC GCTCGCGTTG CTCGCGCTCG AATTCGTGTG GCTCCAGGCG
GACGAGAGCA TGTCATTCGT GCGCGGCATG CGCACCGCGG CCGCGGTCGG CTCGATCGTG
TCGCTCACCT GGCTGCTGGT GCGGCTCGCG GCCGGCGTCG GCGACGCGAT CATCCAGGCC
CATCCGATGG ATACGGCCGA CAATCTCCAC GCGCGGCGCG TCCACACGCA GGCCAAGGTG
CTCGTGCGGA CCGTCATGGT GCTGATCGTG ATCATCGGCA CGGGCGCCGC GCTGATGACG
TTCCCGAACG TGCGCCAGAT CGGCGCGAGC CTGCTGGCGT CGGCCGGCGT CGCCGGCCTG
GTCGCCGGTA TCGCCGCGCG GCCGGTGCTC GGCAACCTGA TCGCCGGGCT GCAGATCGCG
CTTACGCAGC CGATCCGGCT CGACGACGTC GTCGTGATCC AGGGCGAGTG GGGGCGCATC
GAGGAAATCA CCGGCTCGTT CGTGTCGGTG CGGCTGTGGG ACCAGCGGCG CCTCGTCGTG
CCGCTGCAGT GGATCATCGA GAATCCGTTC ACGAACTGGA CGCGCAGCAG CGCGGAAATC
ATCGGCACGG TGTACCTGTC GGTCGACTAC CGTACGCCGC TCGAGCCGCT GCGCGAGGAG
CTCGCGCGGC TGGTTCATGC GGCGCCCGAG TGGGACGGCC GCGTCCAGGT ACTGCAGGTG
ACCGACGCGA CCGAGCGCGC GATGCAGTTG CGCGCGCTCG TCAGCGCGGT CGATTCGTCG
TCGTGCTGGG ACCTGCGCTG CCGTGTGCGC GAAGGGTTGA TCGCGTACCT GCAGGCGCGT
TTTCCGCAAT GCCTGCCGCG CAGCCGGATG GAGCTGTATC CGCACGATTC CGCACCGGAC
GCGCCGAATC CCGTTCGGCC GCATGCGCGC CAGCCCGCCG CCAGCACGGC GGCCAACACC
GCCGCCGATC CGCAGGCCGT CGACGGCCGC TGA
|
|---|
| Protein sequence | MISIEELQRI ADAPLHSWLG TLIVSVIVVL VVLIVHRLGA RIVKRIAQPY PLMSVILRYI
DKPSLVTLAL LALEFVWLQA DESMSFVRGM RTAAAVGSIV SLTWLLVRLA AGVGDAIIQA
HPMDTADNLH ARRVHTQAKV LVRTVMVLIV IIGTGAALMT FPNVRQIGAS LLASAGVAGL
VAGIAARPVL GNLIAGLQIA LTQPIRLDDV VVIQGEWGRI EEITGSFVSV RLWDQRRLVV
PLQWIIENPF TNWTRSSAEI IGTVYLSVDY RTPLEPLREE LARLVHAAPE WDGRVQVLQV
TDATERAMQL RALVSAVDSS SCWDLRCRVR EGLIAYLQAR FPQCLPRSRM ELYPHDSAPD
APNPVRPHAR QPAASTAANT AADPQAVDGR
|
|---|
| |