| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1752 |
|---|
| Symbol | |
|---|
| ID | 6176756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 1958191 |
|---|
| End bp | 1960122 |
|---|
| Gene Length | 1932 bp |
|---|
| Protein Length | 643 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641681511 |
|---|
| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_001808453 |
|---|
| Protein GI | 172060801 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.160036 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTATG CCGTCCCCCA GGCCCAGCAC GCCGACCGTG TGCTCGGCGC GCTCGCCGGG
CGCCTGCCCG CGCCGGCCGA TTCCGCGCGT CTCGTGTCGT CGTGGCAGCG CTCGCTCGAG
CGCTACGCGC TCGACCCCGC TTCGTCGATC GGCCCGCGCG TGCTGACCGC GGCCGAGTTG
CGCGAGGTGC GCGACAAGGA GGAGGCGTTC CTGCGCGCAT CGGGCCAGTG CCTGACGCGC
CTGCACGAGA TGATCCGGGT CGCCGACTAT TGCGTGATGC TGACCGACGC GCATGGCGTG
ACGATCGACT ACCGGATCGA CCGGGAGCGT CGCAACGACT TCCGCCATGC GGGGCTGCAC
ATCGGCTCGT GCTGGTCGGA AAGCGAGGAA GGCACCTGCG GCGTCGCGAG CGTGCTGACC
GATCTCGCGC CGATCACCGT GCACAAGACC GACCATTTCC GCGCGGCGTT CACCACGCTC
ACCTGCAGCG CGGCCCCGAT CTTCTCGCCG GGCGGCGAAC TGATCGGCGT GCTCGATGCG
TCGGCCGTCC AGTCGCCCGA CGGCCGCGAC AGCCAGCGGC TCGTGTACCA GCTCGTGCGG
CAGAGCGCGG CGCTGATCGA GGACGGCTAT TTCGTGCACA GCACCGCGCA GCACTGGATA
TTGTTCGGGC ATCCGAACCG TCACTACGTC GAGGCACAGC CCGAATGGCT GATCGCGTTC
GACGAATGCG GCAATATCGT CGCCGCGAAC CGGCACGCGC GCGACGCGCT GCCGGCGCTG
CGCGAACCGC GCCATATCGA CGAGATCTTC GATGCCACCG AGATGCCGCT GCGCGACGCC
GCGCGGCTCG ATGCGATCGT CGCGCTGCGG CTGCGCGCGA CCGGCGCGCC GCTTTATGCG
CGACTGCGCG CCCCGCTACG GGGTGCGGGC CGCGAAAGCG GCGCGGCACG GGCCGCCCCG
ACCTCGCGCC GCCCCGGCAC CGCGCAGCGC CACGTCGGCG CGCTGACACC GTTCCTGCAC
AGCAGCGACA CGCGCGTCGC GCAGCAGGCC GAACTCGCGC TGCGTGTCGC GAGCAAGCGG
CTGCCGATTC TCGTGCTCGG CGAAACCGGC GCGGGAAAGG AGGTGTTCGC GCGCGCGATC
CACGACGCCG GCGCGCGGCG TACGCGGCCG TTCGTCGCGG TCAACTGTGG CGCGCTGCCC
GAGGCACTGA TCGAAAGCGA GCTGTTCGGC TATGCGGCCG GTGCGTTCAC CGGCGCGCGC
AAGCACGGCG CGCGCGGCAA GATCGCGCTC GCCGACGGCG GCACGCTGTT CCTCGACGAA
ATCGGCGACA TGCCGCTCAC GCTGCAAACG CGCCTGCTGC GCGTGCTCGC CGACGGTGAG
GTCGTGCCAC TCGGCAGCGA CACGCCCGTG CGCGTCGATC TCGACGTGAT CTGCGCGACC
CATCGCGATC TCGCGCGGAT GGTAGCCGAC GGCACGTTCC GCGAGGACCT GTATTACCGG
CTGAGCGGCG CGACGTTCGA GCTGCCGCCG CTGCGCGAGC GCGCGGACGT GGGCGACGTG
ATCGCCACGG TGTTCGCCGA GGAGGCGCAG GCGACCGGCC ACGTGCTCAC GCTCGACCCG
ACGCTTGCCG CGCAGCTCGC CGCGTATCCG TGGCCCGGCA ACGTGCGCCA GCTGCGCAAC
GTGCTGCGCT ATGCGTGCGC GGTATGCGAC GCCGCGCGCG TGGCGCGGCG CGACCTGCCG
GCCGATCTTG CCGCGCAGCT CGGCGCCGGT GCGGCCGGCG CACTGCCGGA CGACGAGCGC
GGCCGCATCG TCGCGGCGCT CACCGCGCAT CGCTGGCGGC CCGATGCGGC CGCGAAGGCG
CTCGGCATCT CGCGCGCGAC GCTGTACCGG CGAATCGCCA AGCACCGGAT CGTCGCGCCG
CACCGCGTCT GA
|
|---|
| Protein sequence | MPYAVPQAQH ADRVLGALAG RLPAPADSAR LVSSWQRSLE RYALDPASSI GPRVLTAAEL
REVRDKEEAF LRASGQCLTR LHEMIRVADY CVMLTDAHGV TIDYRIDRER RNDFRHAGLH
IGSCWSESEE GTCGVASVLT DLAPITVHKT DHFRAAFTTL TCSAAPIFSP GGELIGVLDA
SAVQSPDGRD SQRLVYQLVR QSAALIEDGY FVHSTAQHWI LFGHPNRHYV EAQPEWLIAF
DECGNIVAAN RHARDALPAL REPRHIDEIF DATEMPLRDA ARLDAIVALR LRATGAPLYA
RLRAPLRGAG RESGAARAAP TSRRPGTAQR HVGALTPFLH SSDTRVAQQA ELALRVASKR
LPILVLGETG AGKEVFARAI HDAGARRTRP FVAVNCGALP EALIESELFG YAAGAFTGAR
KHGARGKIAL ADGGTLFLDE IGDMPLTLQT RLLRVLADGE VVPLGSDTPV RVDLDVICAT
HRDLARMVAD GTFREDLYYR LSGATFELPP LRERADVGDV IATVFAEEAQ ATGHVLTLDP
TLAAQLAAYP WPGNVRQLRN VLRYACAVCD AARVARRDLP ADLAAQLGAG AAGALPDDER
GRIVAALTAH RWRPDAAAKA LGISRATLYR RIAKHRIVAP HRV
|
|---|
| |