Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1746 |
Symbol | |
ID | 6177274 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 1950994 |
End bp | 1952349 |
Gene Length | 1356 bp |
Protein Length | 451 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641681505 |
Product | MATE efflux family protein |
Protein accession | YP_001808447 |
Protein GI | 172060795 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.325105 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.141964 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTCGCCG ACATCCGCCG GATCGTCGGT CTCGCGTGGC CGGTGCTCGT CGGCCAGCTC GCGATCATCG CGTTCGGCGT GATCGATACG GCGATGGTCG GCCGCTACTC GGCCATCGAC CTGGCCGCGC TCGGGCTCGG TTCGTCGATC TACGTGTCGA TCTACATCGG GATGACGGGC ATCCTGTCCG CGCTGCAGCC GATCACCGGG CAGCTGTACG GCGCCCGCCG CTACGCCGAG ATCGGCGAGG AAGTCCGCCA GGCGCTATGG CTCGCGCTGA TGCTGGCGGT GCCCGGCTTC CTGCTGCTGC ATTTTCCCGA ACCGCTGCTG CACATCGCCC ACGCGCCGCC CGCGCTGCAC GAGCGCACCG TCGATTACCT GCGCATCCTG TCGTACGGGC TGCCTGCGAG CCTCGTTTTC CGGATCTACA ACGCGCTGAC CAACGCGGCC GGCAAGCCGC GCCTCGCGAT GATCCTGCAG ATCGGCGCGC TGCTGCTCAA GTTTCCGCTC AACGTGTGGT TCATCTTCGG CGGGTTCGGC GTGCCAGCCC TCGGCGGCCC CGGTTGCGGG CTCGCGAGCA CGCTGATCAA CTGGGCGCTC GCGCTGGTCG GCTTCACGCT GCTCGCGAAG CTCGACGTGT TCACGCCGCT CGCGATCTTC TCGCGCTTTT GCTGGCCCGT CTGGGCGCGC CAGAAGGCGA TCCTGAAGCT CGGCGTGCCG ATGGGCCTGT CGTATCTGAT CGAGGTCACG TCGTTCACGT GCATGGCGCT CTTCATCGCA CAGTTCGGTA CGACGACGCT CGCCGGCCAC CAGATCGCCG GCAACATCAG CGCGGTGCTG TACATGACGC CGCTGTCGAT CGGCGTCGCG GCATCGACGC TCGTCGCGCG CGCACTCGGT GCCGGCCGTC CGGACGAAGC GCGCCTGCTC GGCCGGCACA GCGTGATGCT CGCGTGCGGG ATCGCGGCCG CGTATGGCGT GCTGGTGTTC ACGCTGCGTC CGCTGATCGT CAGCGGCTAT ACGCCGAACC CGGCCGTGGT GGCCGCCGCG CTGCCGCTGG TCGCGATCGT CACCTGCTAT CACTTCTTCG ATGCGCTGCA GATCACGTCG GCATTCGTGC TGCGCGCGTA CAAGGTCGCG GTCGTGCCGA CCGTGATCTA CGCGGTCGCG CTGTGGGGCG TCGGGCTGGG CGGCGGCTAC ATGCTCGGCT TCGACATCGG CGGCATCGCA CCGGCATGGC TGACCGGTGC GCGTGGCTTC TGGTTCGCGA ACACGATCAG CCTGATGCTC GCCGGTGCGG GACTCGCCCT CTACCTGCGC CGCGTCAGCC GCGCGGCGCT GTCCGTCGGC GCCTGA
|
Protein sequence | MFADIRRIVG LAWPVLVGQL AIIAFGVIDT AMVGRYSAID LAALGLGSSI YVSIYIGMTG ILSALQPITG QLYGARRYAE IGEEVRQALW LALMLAVPGF LLLHFPEPLL HIAHAPPALH ERTVDYLRIL SYGLPASLVF RIYNALTNAA GKPRLAMILQ IGALLLKFPL NVWFIFGGFG VPALGGPGCG LASTLINWAL ALVGFTLLAK LDVFTPLAIF SRFCWPVWAR QKAILKLGVP MGLSYLIEVT SFTCMALFIA QFGTTTLAGH QIAGNISAVL YMTPLSIGVA ASTLVARALG AGRPDEARLL GRHSVMLACG IAAAYGVLVF TLRPLIVSGY TPNPAVVAAA LPLVAIVTCY HFFDALQITS AFVLRAYKVA VVPTVIYAVA LWGVGLGGGY MLGFDIGGIA PAWLTGARGF WFANTISLML AGAGLALYLR RVSRAALSVG A
|
| |