| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1731 |
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| Symbol | |
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| ID | 6176930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 1934475 |
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| End bp | 1935560 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641681490 |
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| Product | RNA polymerase sigma factor RpoS |
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| Protein accession | YP_001808432 |
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| Protein GI | 172060780 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.194795 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.148712 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAAAT CGAAGCGCCA CGAGCCGCAA GCCGAGTCTG AGAAGATCAG TCGTGCCACG
CAAGCATCGG TGGAGCGAGC TGGCGCTTCG AAGGACGACG AAGACGACGT CGCGGAAAAC
GAACGTGATC TCGAGGCAAG CGACGCCGAA GCGGACGGCG ACGGCGAGCG CGAAGGCCGT
GCGGAAGCAG CGCCCGACGT CGACGATTTC CGCGCATTGC TGCAGGCCGA GCTCACGGCC
GACACGATCC AGCATTACCT GAACCGCATC AGCGTGAAGC CGCTGCTGAC CGTCGAGGAG
GAGCAGCGCT ATTCGCGGCT CGCGAAGGCC GGCGAATTCG AGGCGCGGCA GGTGATGATC
GAGCGCAACC TGCGTCTCGT CGTCAGTATC GCGAAGGGTT ACCTGAACCG CGGCGTGCCG
CTGCTCGACC TGATCGAGGA AGGCAACCTC GGCCTGATGC ACGCGATCGA GAAATTCGAC
CCGACGCGCG GCTTTCGCTT CTCGACCTAT GCGACGTGGT GGATTCGCCA GAGCATCGAG
CGGGCGATCA TGAACCAGGC GCGCACCGTG CGCCTGCCCG TGCACGTGAT CCGCGAGCTG
AACCAGGTGC TGCGCGCGAA GCGCCACCTC GAAAAGAATT CGATGTCGAC GGGCGAGGCG
GCCGAGCGCC GCGAAGCCAG CATCGACGAC ATCGCCTATC TCACCGGCAA GACCGCCGAG
GAAGTCACCG ACATCCTCGC GCTCAATGAG CACACCGCAT CGCTCGACGC GCCGCTCGAC
CTCGATCCCG CGAGCAGCCT GCTCGATCTG CTGCCCGACG ACCAGAGCCA GTCGCCCGAC
GCCGAGGTGC AGCACCGAGA GCTCGAGACG CTCACGCGCG CGTGGCTGTC ACGTCTGTCC
GACAAGCACC GCCACGTGAT CGAGCGCCGC TTCGGGCTGA ACCACATCGA ACCGGCCACG
CTCGAGGAGC TGGCCGACGA GATGGGGCTC ACGCGCGAGC GCGTGCGGCA GATCCAGCAG
GAAGCGCTGG TGCGCCTCAA GCGGTTCTTT GCCTCCAACG GCGTGCGCAA GGACGCCGTT
CTGTAA
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| Protein sequence | MPKSKRHEPQ AESEKISRAT QASVERAGAS KDDEDDVAEN ERDLEASDAE ADGDGEREGR
AEAAPDVDDF RALLQAELTA DTIQHYLNRI SVKPLLTVEE EQRYSRLAKA GEFEARQVMI
ERNLRLVVSI AKGYLNRGVP LLDLIEEGNL GLMHAIEKFD PTRGFRFSTY ATWWIRQSIE
RAIMNQARTV RLPVHVIREL NQVLRAKRHL EKNSMSTGEA AERREASIDD IAYLTGKTAE
EVTDILALNE HTASLDAPLD LDPASSLLDL LPDDQSQSPD AEVQHRELET LTRAWLSRLS
DKHRHVIERR FGLNHIEPAT LEELADEMGL TRERVRQIQQ EALVRLKRFF ASNGVRKDAV
L
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